miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 5' -56.8 NC_001847.1 + 3 0.69 0.6645
Target:  5'- cUCCGCGCCG-CGccGCGCGGGCc-- -3'
miRNA:   3'- aAGGCGCGGCuGUucUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 43 0.67 0.791736
Target:  5'- uUUCCGCG-CGGCGcgugcauugcggcGGGCGgGGGCGGg -3'
miRNA:   3'- -AAGGCGCgGCUGU-------------UCUGUgCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 397 0.68 0.754924
Target:  5'- -aCCGCGCucCGAcCGAGACcgagggcccgggGCGGGCGGg -3'
miRNA:   3'- aaGGCGCG--GCU-GUUCUG------------UGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 963 0.68 0.71543
Target:  5'- -aCUGCGCCGGCAcccGGGC-CGG-CGGg -3'
miRNA:   3'- aaGGCGCGGCUGU---UCUGuGCCuGUCa -5'
6368 5' -56.8 NC_001847.1 + 2226 0.68 0.754924
Target:  5'- -gCCaGCGCCGcgGCGcuGGGCGCGGGCGuGUg -3'
miRNA:   3'- aaGG-CGCGGC--UGU--UCUGUGCCUGU-CA- -5'
6368 5' -56.8 NC_001847.1 + 2821 0.66 0.8605
Target:  5'- -gCCGCGCCGGCAccucCGCcGGCGGg -3'
miRNA:   3'- aaGGCGCGGCUGUucu-GUGcCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 3098 0.68 0.725435
Target:  5'- -gCCGCgGCCGGCAGGcCGCGGcccgccGCGGc -3'
miRNA:   3'- aaGGCG-CGGCUGUUCuGUGCC------UGUCa -5'
6368 5' -56.8 NC_001847.1 + 3149 0.66 0.85268
Target:  5'- -gCgGCGCCGGC--GGCGCGG-CGGg -3'
miRNA:   3'- aaGgCGCGGCUGuuCUGUGCCuGUCa -5'
6368 5' -56.8 NC_001847.1 + 3228 0.69 0.674775
Target:  5'- cUCCGCGCCGcCGcGGCuuGCGGuACAGc -3'
miRNA:   3'- aAGGCGCGGCuGUuCUG--UGCC-UGUCa -5'
6368 5' -56.8 NC_001847.1 + 3275 0.68 0.71543
Target:  5'- -gCCGCgcgGCCGGCGAG-CACGGcgcGCAGc -3'
miRNA:   3'- aaGGCG---CGGCUGUUCuGUGCC---UGUCa -5'
6368 5' -56.8 NC_001847.1 + 3788 0.66 0.8605
Target:  5'- -cCCGCGCCGcCGAagcgcacgcGGC-CGGGCGGc -3'
miRNA:   3'- aaGGCGCGGCuGUU---------CUGuGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 4603 0.66 0.836435
Target:  5'- aUCCGCcacagcucgGCCaGCucGGCGCGGGCGGc -3'
miRNA:   3'- aAGGCG---------CGGcUGuuCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 5009 0.67 0.792653
Target:  5'- --gCGCGgCGGCGGcGGCGCGGAgGGg -3'
miRNA:   3'- aagGCGCgGCUGUU-CUGUGCCUgUCa -5'
6368 5' -56.8 NC_001847.1 + 5219 0.7 0.623219
Target:  5'- -gCCGCggcgGCCGGCGGGGCGCGcGCGGc -3'
miRNA:   3'- aaGGCG----CGGCUGUUCUGUGCcUGUCa -5'
6368 5' -56.8 NC_001847.1 + 7403 0.66 0.8605
Target:  5'- --gCGCGCuCGGCAGacGGCACGcGGCGGc -3'
miRNA:   3'- aagGCGCG-GCUGUU--CUGUGC-CUGUCa -5'
6368 5' -56.8 NC_001847.1 + 7894 0.66 0.819434
Target:  5'- -aCCuaGCCGcGCGGGGCGCGcGGCGGc -3'
miRNA:   3'- aaGGcgCGGC-UGUUCUGUGC-CUGUCa -5'
6368 5' -56.8 NC_001847.1 + 10511 0.68 0.735359
Target:  5'- -cCCGCGCUGcuGCGGGcCAUGGAgCGGUg -3'
miRNA:   3'- aaGGCGCGGC--UGUUCuGUGCCU-GUCA- -5'
6368 5' -56.8 NC_001847.1 + 10592 0.66 0.828025
Target:  5'- -gCCGCGCUgcucucggcaGACGcAGACGCGG-UAGUg -3'
miRNA:   3'- aaGGCGCGG----------CUGU-UCUGUGCCuGUCA- -5'
6368 5' -56.8 NC_001847.1 + 11312 0.66 0.85268
Target:  5'- --gCGCGcCCGcCGAGGCcgGCGGGCGGc -3'
miRNA:   3'- aagGCGC-GGCuGUUCUG--UGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 12439 0.68 0.754924
Target:  5'- cUCCaagGCGCCGGCAcAGcGCGCGcGGCGGa -3'
miRNA:   3'- aAGG---CGCGGCUGU-UC-UGUGC-CUGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.