miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 5' -56.8 NC_001847.1 + 106601 0.66 0.8605
Target:  5'- -cCCGCGCCGcCGAagcgcacgcGGC-CGGGCGGc -3'
miRNA:   3'- aaGGCGCGGCuGUU---------CUGuGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 26446 0.66 0.85268
Target:  5'- --aCGCGC--GCGAGGCAgGGGCGGg -3'
miRNA:   3'- aagGCGCGgcUGUUCUGUgCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 3149 0.66 0.85268
Target:  5'- -gCgGCGCCGGC--GGCGCGG-CGGg -3'
miRNA:   3'- aaGgCGCGGCUGuuCUGUGCCuGUCa -5'
6368 5' -56.8 NC_001847.1 + 71914 0.66 0.851887
Target:  5'- gUgCGCGCCGuccagguagauacGCAcGACGCGGAgAGc -3'
miRNA:   3'- aAgGCGCGGC-------------UGUuCUGUGCCUgUCa -5'
6368 5' -56.8 NC_001847.1 + 103450 0.66 0.844656
Target:  5'- -cUCGCGCCGuACAgcgcAGACACGGcCGc- -3'
miRNA:   3'- aaGGCGCGGC-UGU----UCUGUGCCuGUca -5'
6368 5' -56.8 NC_001847.1 + 96577 0.66 0.844656
Target:  5'- cUCCGCGgcuCCGGCAgcAGGCGCuGcCAGUa -3'
miRNA:   3'- aAGGCGC---GGCUGU--UCUGUGcCuGUCA- -5'
6368 5' -56.8 NC_001847.1 + 73754 0.66 0.844656
Target:  5'- gUUCCaaGCGCCgGGCGGcGGCGCGGGCc-- -3'
miRNA:   3'- -AAGG--CGCGG-CUGUU-CUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 79542 0.66 0.844656
Target:  5'- gUCgGgGCCGGgGGGGCugGGGCu-- -3'
miRNA:   3'- aAGgCgCGGCUgUUCUGugCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 57499 0.66 0.844656
Target:  5'- -cCCGCGUCGA--AGGCcuccACGGGCGGc -3'
miRNA:   3'- aaGGCGCGGCUguUCUG----UGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 95552 0.66 0.85268
Target:  5'- -gCCGCGCCGcaGCAGcGCugGGGCc-- -3'
miRNA:   3'- aaGGCGCGGC--UGUUcUGugCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 96182 0.66 0.85268
Target:  5'- aUCgGgGCCGGCAGcGGCAauGGCGGg -3'
miRNA:   3'- aAGgCgCGGCUGUU-CUGUgcCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 108762 0.66 0.85268
Target:  5'- -gCCGCGCUgGGCGccGGACGCgccGGGCGGc -3'
miRNA:   3'- aaGGCGCGG-CUGU--UCUGUG---CCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 130182 0.66 0.8605
Target:  5'- -cCCGCGggcgcCCGGCcugAAGAgACGGGCGGc -3'
miRNA:   3'- aaGGCGC-----GGCUG---UUCUgUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 111670 0.66 0.8605
Target:  5'- --gCGCGCCGAgcgcgauggcCGAGGCGgCGGACGc- -3'
miRNA:   3'- aagGCGCGGCU----------GUUCUGU-GCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 103024 0.66 0.8605
Target:  5'- -cCCaGCGCCGGCG----GCGGGCGGg -3'
miRNA:   3'- aaGG-CGCGGCUGUucugUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 35981 0.66 0.8605
Target:  5'- cUCC-CGCCGGCuGGcgccacaaggcGCGCGGAUAGc -3'
miRNA:   3'- aAGGcGCGGCUGuUC-----------UGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 3788 0.66 0.8605
Target:  5'- -cCCGCGCCGcCGAagcgcacgcGGC-CGGGCGGc -3'
miRNA:   3'- aaGGCGCGGCuGUU---------CUGuGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 29971 0.66 0.8605
Target:  5'- -gCCGcCGCCGACGcGGC-CGGGCcGg -3'
miRNA:   3'- aaGGC-GCGGCUGUuCUGuGCCUGuCa -5'
6368 5' -56.8 NC_001847.1 + 2821 0.66 0.8605
Target:  5'- -gCCGCGCCGGCAccucCGCcGGCGGg -3'
miRNA:   3'- aaGGCGCGGCUGUucu-GUGcCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 47555 0.66 0.8605
Target:  5'- -aCgGCGCCGGCcucgguGAG-CACGGGCAc- -3'
miRNA:   3'- aaGgCGCGGCUG------UUCuGUGCCUGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.