miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 5' -56.8 NC_001847.1 + 114709 1.05 0.003544
Target:  5'- cUUCCGCGCCGACAAGACACGGACAGUg -3'
miRNA:   3'- -AAGGCGCGGCUGUUCUGUGCCUGUCA- -5'
6368 5' -56.8 NC_001847.1 + 73180 0.83 0.109076
Target:  5'- -gCCGCGCCGGCGGGcacggcGCGCGGGCAGg -3'
miRNA:   3'- aaGGCGCGGCUGUUC------UGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 94850 0.78 0.247004
Target:  5'- gUCUGCGCCGAgGgggaccuugggGGGCGCGGGCAGc -3'
miRNA:   3'- aAGGCGCGGCUgU-----------UCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 54810 0.78 0.247004
Target:  5'- -gCCGCGCUGGCGAG-CGCGGGCAc- -3'
miRNA:   3'- aaGGCGCGGCUGUUCuGUGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 86470 0.77 0.278529
Target:  5'- -aCgGCGCCGACGGcGGCACGGACGa- -3'
miRNA:   3'- aaGgCGCGGCUGUU-CUGUGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 37267 0.75 0.343176
Target:  5'- aUCCGCGCCGcCGacugGGACGCGGGCc-- -3'
miRNA:   3'- aAGGCGCGGCuGU----UCUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 88555 0.75 0.350993
Target:  5'- -gCCGCGCCGGCGGGGCugacgcccggcGCGGACu-- -3'
miRNA:   3'- aaGGCGCGGCUGUUCUG-----------UGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 44674 0.74 0.400496
Target:  5'- -aCCGUGaCCGGCGAGcCGCGGAUGGg -3'
miRNA:   3'- aaGGCGC-GGCUGUUCuGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 33493 0.74 0.409169
Target:  5'- gUCCGCGgCGGC--GGCGCGGGCGGc -3'
miRNA:   3'- aAGGCGCgGCUGuuCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 67749 0.73 0.426861
Target:  5'- --aCGCGCCGGCGcauuguGGAgACGGGCAGc -3'
miRNA:   3'- aagGCGCGGCUGU------UCUgUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 42737 0.73 0.435875
Target:  5'- -gCCGCGCgGGCGGcGGgGCGGACAGc -3'
miRNA:   3'- aaGGCGCGgCUGUU-CUgUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 131902 0.73 0.454228
Target:  5'- -cCUGcCGCCGGCGAGcacgGCGCGGGCGGc -3'
miRNA:   3'- aaGGC-GCGGCUGUUC----UGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 29089 0.73 0.454228
Target:  5'- -cCUGcCGCCGGCGAGcacgGCGCGGGCGGc -3'
miRNA:   3'- aaGGC-GCGGCUGUUC----UGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 73883 0.73 0.46356
Target:  5'- -cCCGCGCgCGcCGcGGACGCGGACGGc -3'
miRNA:   3'- aaGGCGCG-GCuGU-UCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 67522 0.73 0.470152
Target:  5'- gUCUcCGCCGGCGccgccuuuuuccgcAGGCGCGGGCGGUu -3'
miRNA:   3'- aAGGcGCGGCUGU--------------UCUGUGCCUGUCA- -5'
6368 5' -56.8 NC_001847.1 + 93151 0.73 0.472992
Target:  5'- gUUCCGCGCCGACGcAGcGCucgGCGaGACAGa -3'
miRNA:   3'- -AAGGCGCGGCUGU-UC-UG---UGC-CUGUCa -5'
6368 5' -56.8 NC_001847.1 + 132221 0.73 0.472992
Target:  5'- -gCCGCGCUGGC--GGCGCGGACcGUg -3'
miRNA:   3'- aaGGCGCGGCUGuuCUGUGCCUGuCA- -5'
6368 5' -56.8 NC_001847.1 + 29408 0.73 0.472992
Target:  5'- -gCCGCGCUGGC--GGCGCGGACcGUg -3'
miRNA:   3'- aaGGCGCGGCUGuuCUGUGCCUGuCA- -5'
6368 5' -56.8 NC_001847.1 + 72962 0.72 0.482519
Target:  5'- cUUCGCGCgGAUugGGGACGCGGACGc- -3'
miRNA:   3'- aAGGCGCGgCUG--UUCUGUGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 16780 0.72 0.501844
Target:  5'- -gCCGCGCCGcacgGCGGGGuCAuCGGGCAGg -3'
miRNA:   3'- aaGGCGCGGC----UGUUCU-GU-GCCUGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.