miRNA display CGI


Results 21 - 40 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 3' -54.5 NC_001847.1 + 7731 0.7 0.769023
Target:  5'- cGCAGgGCGCGGGCG-CG-GAGGcGGCg -3'
miRNA:   3'- -CGUCgCGUGCUUGCaGCgCUCC-UUGa -5'
6369 3' -54.5 NC_001847.1 + 8119 0.68 0.856546
Target:  5'- cGCAgGCGCggggccccagggGCGGGCGgugcugCGCGAGG-GCUa -3'
miRNA:   3'- -CGU-CGCG------------UGCUUGCa-----GCGCUCCuUGA- -5'
6369 3' -54.5 NC_001847.1 + 8129 0.66 0.923682
Target:  5'- cGCGGgGCgggcgggccgACGAGCcUCGCGGGGcuGCUu -3'
miRNA:   3'- -CGUCgCG----------UGCUUGcAGCGCUCCu-UGA- -5'
6369 3' -54.5 NC_001847.1 + 8581 0.67 0.897675
Target:  5'- gGCAGCGUggugguuagccgcGCGAGCGUCagccgcaGCGcaagccccgccggGGGAGCg -3'
miRNA:   3'- -CGUCGCG-------------UGCUUGCAG-------CGC-------------UCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 8608 0.68 0.848604
Target:  5'- gGCGGCGCuCGGccggggGCGggGgGAGGAGCg -3'
miRNA:   3'- -CGUCGCGuGCU------UGCagCgCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 9206 0.67 0.91154
Target:  5'- -gGGCGCcaGCGGGCccaauaaaaaggaGUCGCGGGGGcgggGCUg -3'
miRNA:   3'- cgUCGCG--UGCUUG-------------CAGCGCUCCU----UGA- -5'
6369 3' -54.5 NC_001847.1 + 10833 0.67 0.892348
Target:  5'- aGCAccuGCGCGCGAcggcggcGCGUgGCcGAGGcGCg -3'
miRNA:   3'- -CGU---CGCGUGCU-------UGCAgCG-CUCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 11115 0.69 0.832124
Target:  5'- cGUGGCGCugGAggACGgcuucuuggaCGCGGcGGAGCUg -3'
miRNA:   3'- -CGUCGCGugCU--UGCa---------GCGCU-CCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 12226 0.68 0.86428
Target:  5'- cGCGGCGCGCgcacacccGAACG--GCGAGGGcuGCg -3'
miRNA:   3'- -CGUCGCGUG--------CUUGCagCGCUCCU--UGa -5'
6369 3' -54.5 NC_001847.1 + 12646 0.66 0.947831
Target:  5'- uGCGGCuGCgggggagAgGAGCGUgGUGgAGGAGCUg -3'
miRNA:   3'- -CGUCG-CG-------UgCUUGCAgCGC-UCCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 12673 0.68 0.848604
Target:  5'- aCGGCGaCGCGAagcugcacugcGCGUCGgCGGGGuGCa -3'
miRNA:   3'- cGUCGC-GUGCU-----------UGCAGC-GCUCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 12817 0.77 0.42146
Target:  5'- cGUGGCGCGCGAGCGgCGCGcuuGGGAGa- -3'
miRNA:   3'- -CGUCGCGUGCUUGCaGCGC---UCCUUga -5'
6369 3' -54.5 NC_001847.1 + 12932 0.71 0.720031
Target:  5'- -gGGCGCGCGuguCGUCGUGcgguGGGGCg -3'
miRNA:   3'- cgUCGCGUGCuu-GCAGCGCu---CCUUGa -5'
6369 3' -54.5 NC_001847.1 + 13340 0.67 0.918034
Target:  5'- gGCGGCGaGCaGGCGccCGCGAGGAcGCUc -3'
miRNA:   3'- -CGUCGCgUGcUUGCa-GCGCUCCU-UGA- -5'
6369 3' -54.5 NC_001847.1 + 13812 0.71 0.719028
Target:  5'- aGCGGUGUACGGgggccggcgugugACGgugCGCGAGGGcACg -3'
miRNA:   3'- -CGUCGCGUGCU-------------UGCa--GCGCUCCU-UGa -5'
6369 3' -54.5 NC_001847.1 + 13846 0.68 0.856546
Target:  5'- cGCGGCGUuuauucuucGCuGAugGUgGCGAGGGGg- -3'
miRNA:   3'- -CGUCGCG---------UG-CUugCAgCGCUCCUUga -5'
6369 3' -54.5 NC_001847.1 + 14034 0.69 0.8149
Target:  5'- cGCAGCGCGCaguuuacCGUCGCGGcgcaGAGCg -3'
miRNA:   3'- -CGUCGCGUGcuu----GCAGCGCUc---CUUGa -5'
6369 3' -54.5 NC_001847.1 + 14330 0.68 0.8718
Target:  5'- cGCGGUgggGC-CGGGCGUgguggcggcgccUGCGGGGAACg -3'
miRNA:   3'- -CGUCG---CGuGCUUGCA------------GCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 14853 0.71 0.749734
Target:  5'- cGCAGCGCgaGCGuuGCGUCGguCGGGuGGACa -3'
miRNA:   3'- -CGUCGCG--UGCu-UGCAGC--GCUC-CUUGa -5'
6369 3' -54.5 NC_001847.1 + 15302 0.69 0.806029
Target:  5'- gGCuGCGCGCGGGCGUgCGCGAc----- -3'
miRNA:   3'- -CGuCGCGUGCUUGCA-GCGCUccuuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.