miRNA display CGI


Results 1 - 20 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 3' -54.5 NC_001847.1 + 63 0.7 0.778485
Target:  5'- uGCGGCGgGCGGggGCGggGUGGGGGAUg -3'
miRNA:   3'- -CGUCGCgUGCU--UGCagCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 781 0.72 0.652598
Target:  5'- gGCGGCGC-CGGccucgucgucguccgACGagGCGGGGGACg -3'
miRNA:   3'- -CGUCGCGuGCU---------------UGCagCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 1042 0.71 0.709964
Target:  5'- cGCAGCaGCACGAGCGUcuccCGCG-GGccCUg -3'
miRNA:   3'- -CGUCG-CGUGCUUGCA----GCGCuCCuuGA- -5'
6369 3' -54.5 NC_001847.1 + 1225 0.76 0.44869
Target:  5'- uUAGCGCGCGGGCGccCGUGuGGGACa -3'
miRNA:   3'- cGUCGCGUGCUUGCa-GCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 1428 0.66 0.948264
Target:  5'- cGCGGUGCGCGGGCccaggCGCGuGGc--- -3'
miRNA:   3'- -CGUCGCGUGCUUGca---GCGCuCCuuga -5'
6369 3' -54.5 NC_001847.1 + 1898 0.68 0.856546
Target:  5'- cCAGCGcCGCGAGCGcgUGCGAG-AGCc -3'
miRNA:   3'- cGUCGC-GUGCUUGCa-GCGCUCcUUGa -5'
6369 3' -54.5 NC_001847.1 + 2070 0.66 0.934245
Target:  5'- cGCAGCGguggcgGCGAGCGcccCGCGGGGcccGCg -3'
miRNA:   3'- -CGUCGCg-----UGCUUGCa--GCGCUCCu--UGa -5'
6369 3' -54.5 NC_001847.1 + 2478 0.73 0.627761
Target:  5'- gGCGGCGCcccCGccgccgugugaaGACGUCGCGAGGGcCg -3'
miRNA:   3'- -CGUCGCGu--GC------------UUGCAGCGCUCCUuGa -5'
6369 3' -54.5 NC_001847.1 + 2743 0.69 0.823601
Target:  5'- cGCAGgGCGgGAGCGa-GCGAGGGc-- -3'
miRNA:   3'- -CGUCgCGUgCUUGCagCGCUCCUuga -5'
6369 3' -54.5 NC_001847.1 + 3002 0.69 0.822739
Target:  5'- aGCcGCGCGCGcuccaccGCGUCGCGGGccgcgccGAGCa -3'
miRNA:   3'- -CGuCGCGUGCu------UGCAGCGCUC-------CUUGa -5'
6369 3' -54.5 NC_001847.1 + 3137 0.66 0.923682
Target:  5'- aGCAGCccCGCGAGCa--GCGuGGAGCa -3'
miRNA:   3'- -CGUCGc-GUGCUUGcagCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 3363 0.68 0.8718
Target:  5'- -gGGCGUACGcGCGcCGCaggcucugcagGAGGAACa -3'
miRNA:   3'- cgUCGCGUGCuUGCaGCG-----------CUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 3729 0.72 0.689635
Target:  5'- cGUAGCGCGCGGccGCcUCGCGGaucucGGGGCa -3'
miRNA:   3'- -CGUCGCGUGCU--UGcAGCGCU-----CCUUGa -5'
6369 3' -54.5 NC_001847.1 + 5192 0.66 0.93916
Target:  5'- aCAGCGcCGCGAgcgcggcaagcGCGcCGCGAcGGAAgCUg -3'
miRNA:   3'- cGUCGC-GUGCU-----------UGCaGCGCU-CCUU-GA- -5'
6369 3' -54.5 NC_001847.1 + 5723 0.74 0.576204
Target:  5'- cGCAGCagGCGGGCGUCGCaucaGGGGACg -3'
miRNA:   3'- -CGUCGcgUGCUUGCAGCGc---UCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 5961 0.71 0.720031
Target:  5'- cGUAcGCGCGCGcGCGUaagccucggcuuUGCGGGGGGCa -3'
miRNA:   3'- -CGU-CGCGUGCuUGCA------------GCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 6094 0.69 0.832124
Target:  5'- cGCGGagGCGCGAGaCGccCGCGAGGcGCg -3'
miRNA:   3'- -CGUCg-CGUGCUU-GCa-GCGCUCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 6824 0.72 0.658797
Target:  5'- uGCAGCGCAaagguGACGUCcucgGCGAGGuGCUc -3'
miRNA:   3'- -CGUCGCGUgc---UUGCAG----CGCUCCuUGA- -5'
6369 3' -54.5 NC_001847.1 + 6863 0.7 0.787813
Target:  5'- aGCAcGCGCGCGGguaggGCcUUGcCGAGGAGCa -3'
miRNA:   3'- -CGU-CGCGUGCU-----UGcAGC-GCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 7699 0.66 0.948264
Target:  5'- uGCGGUGCugGAGCG-CGCcuuGGGc-- -3'
miRNA:   3'- -CGUCGCGugCUUGCaGCGcu-CCUuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.