miRNA display CGI


Results 1 - 20 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 3' -54.5 NC_001847.1 + 95760 0.66 0.948264
Target:  5'- cCGGCGC-CGGcuccccgacgGCGUCGC--GGAGCUg -3'
miRNA:   3'- cGUCGCGuGCU----------UGCAGCGcuCCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 49177 0.66 0.943832
Target:  5'- --cGCGC-CGGGCGUCcgcugcaaGCGGGGAcgGCa -3'
miRNA:   3'- cguCGCGuGCUUGCAG--------CGCUCCU--UGa -5'
6369 3' -54.5 NC_001847.1 + 104799 0.66 0.942456
Target:  5'- aGCAaCGCGCGGugcuCGUCGUccagcccgccgccgGGGGGGCg -3'
miRNA:   3'- -CGUcGCGUGCUu---GCAGCG--------------CUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 107693 0.66 0.93916
Target:  5'- aCGGCGCcuGCGGuuggcgGCGcUCGCGGGcGGGCa -3'
miRNA:   3'- cGUCGCG--UGCU------UGC-AGCGCUC-CUUGa -5'
6369 3' -54.5 NC_001847.1 + 56817 0.66 0.93916
Target:  5'- cCGGCGCGCcuGGGgG-CGCGGGGAGg- -3'
miRNA:   3'- cGUCGCGUG--CUUgCaGCGCUCCUUga -5'
6369 3' -54.5 NC_001847.1 + 111094 0.66 0.93916
Target:  5'- gGCuGCGCGaGAAgGUCGCGcGGcACg -3'
miRNA:   3'- -CGuCGCGUgCUUgCAGCGCuCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 74532 0.66 0.93916
Target:  5'- cGCGGCGCuuGAgucaguuuaACGUCGCcAGcGACUa -3'
miRNA:   3'- -CGUCGCGugCU---------UGCAGCGcUCcUUGA- -5'
6369 3' -54.5 NC_001847.1 + 29899 0.66 0.93916
Target:  5'- gGCGGCccuGC-CGGcCGcCGCGGGGGGCc -3'
miRNA:   3'- -CGUCG---CGuGCUuGCaGCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 22404 0.66 0.93916
Target:  5'- cGCGGCGaGCGugcuCGUCcGCG-GGGGCg -3'
miRNA:   3'- -CGUCGCgUGCuu--GCAG-CGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 53781 0.66 0.943832
Target:  5'- gGCGGCaGCACcgcagcCGcCGCGAGGAGg- -3'
miRNA:   3'- -CGUCG-CGUGcuu---GCaGCGCUCCUUga -5'
6369 3' -54.5 NC_001847.1 + 102984 0.66 0.943832
Target:  5'- cGCcGCGCACGc-CGUCGCGgcgugcgcGGGcGCg -3'
miRNA:   3'- -CGuCGCGUGCuuGCAGCGC--------UCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 116198 0.66 0.943832
Target:  5'- cGCcGC-CACGGACGcCGCGGcGGcGCUg -3'
miRNA:   3'- -CGuCGcGUGCUUGCaGCGCU-CCuUGA- -5'
6369 3' -54.5 NC_001847.1 + 99470 0.66 0.948264
Target:  5'- aGCAGCGCcgcuuGCGucacGACGUCGgccgcCGAGGcGGCg -3'
miRNA:   3'- -CGUCGCG-----UGC----UUGCAGC-----GCUCC-UUGa -5'
6369 3' -54.5 NC_001847.1 + 99019 0.66 0.948264
Target:  5'- cGCGGCGCGCGcGGCuUCGUGgaAGGcGCc -3'
miRNA:   3'- -CGUCGCGUGC-UUGcAGCGC--UCCuUGa -5'
6369 3' -54.5 NC_001847.1 + 43443 0.66 0.948264
Target:  5'- cGCGGUGCcCGAgaGCGaaGCG-GGAGCc -3'
miRNA:   3'- -CGUCGCGuGCU--UGCagCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 1428 0.66 0.948264
Target:  5'- cGCGGUGCGCGGGCccaggCGCGuGGc--- -3'
miRNA:   3'- -CGUCGCGUGCUUGca---GCGCuCCuuga -5'
6369 3' -54.5 NC_001847.1 + 62907 0.66 0.945634
Target:  5'- gGUGGCGCgggugcucggggcccGCGGGCGgcuccUCGuCGGGGGGCa -3'
miRNA:   3'- -CGUCGCG---------------UGCUUGC-----AGC-GCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 73876 0.66 0.943832
Target:  5'- cGCGGCGCccGCGcGCGcCGCGGacgcGGAcgGCg -3'
miRNA:   3'- -CGUCGCG--UGCuUGCaGCGCU----CCU--UGa -5'
6369 3' -54.5 NC_001847.1 + 21676 0.66 0.943832
Target:  5'- cCGGCG-ACGggUaUgGCGAGGAGCc -3'
miRNA:   3'- cGUCGCgUGCuuGcAgCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 124647 0.66 0.943832
Target:  5'- aGCAGCGCGgGGcCGUCG--GGGAAg- -3'
miRNA:   3'- -CGUCGCGUgCUuGCAGCgcUCCUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.