Results 1 - 20 of 367 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6369 | 3' | -54.5 | NC_001847.1 | + | 131926 | 0.82 | 0.225831 |
Target: 5'- gGCGGCGCGCGAGCGgcugCGCGAGcuGGCg -3' miRNA: 3'- -CGUCGCGUGCUUGCa---GCGCUCc-UUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 94387 | 0.74 | 0.565987 |
Target: 5'- uGCGGCGCACGAuucgGCGcaguacCGCGAcGGGGCc -3' miRNA: 3'- -CGUCGCGUGCU----UGCa-----GCGCU-CCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 98852 | 0.73 | 0.586463 |
Target: 5'- aGCGGCGCGCGAACuUCGUGcggcaagccgaAGGcGCUa -3' miRNA: 3'- -CGUCGCGUGCUUGcAGCGC-----------UCCuUGA- -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 95760 | 0.66 | 0.948264 |
Target: 5'- cCGGCGC-CGGcuccccgacgGCGUCGC--GGAGCUg -3' miRNA: 3'- cGUCGCGuGCU----------UGCAGCGcuCCUUGA- -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 12817 | 0.77 | 0.42146 |
Target: 5'- cGUGGCGCGCGAGCGgCGCGcuuGGGAGa- -3' miRNA: 3'- -CGUCGCGUGCUUGCaGCGC---UCCUUga -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 120510 | 0.76 | 0.430427 |
Target: 5'- aGCGGCGCGCGAGCGcCGCGGucGAAa- -3' miRNA: 3'- -CGUCGCGUGCUUGCaGCGCUc-CUUga -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 25213 | 0.76 | 0.457981 |
Target: 5'- cGCGGCcggcaaagaGCAUGAucgGCGUCGCGGGGAcaACg -3' miRNA: 3'- -CGUCG---------CGUGCU---UGCAGCGCUCCU--UGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 44450 | 0.75 | 0.48645 |
Target: 5'- cGCGGCGCGCGGcACGcgCGCGAGacAGCUa -3' miRNA: 3'- -CGUCGCGUGCU-UGCa-GCGCUCc-UUGA- -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 65953 | 0.75 | 0.525652 |
Target: 5'- -aGGCGCugGAGC-UCGCGcGGGACg -3' miRNA: 3'- cgUCGCGugCUUGcAGCGCuCCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 101363 | 0.74 | 0.555816 |
Target: 5'- uGCAuGCGCGCGcuuGCGcCGCG-GGGGCUg -3' miRNA: 3'- -CGU-CGCGUGCu--UGCaGCGCuCCUUGA- -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 69455 | 0.74 | 0.535643 |
Target: 5'- gGCGGCGCGCGcGCGgcgGCGGcGGGGCUc -3' miRNA: 3'- -CGUCGCGUGCuUGCag-CGCU-CCUUGA- -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 122142 | 0.75 | 0.496126 |
Target: 5'- cCGGCGCGCaGGGCGcCGCGcGGGACg -3' miRNA: 3'- cGUCGCGUG-CUUGCaGCGCuCCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 46616 | 0.78 | 0.361985 |
Target: 5'- cGCGGCGCACGAGCGUgGUGA--AGCa -3' miRNA: 3'- -CGUCGCGUGCUUGCAgCGCUccUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 43245 | 0.74 | 0.554802 |
Target: 5'- -gGGCGCGCGGGCGgCGCGgcgcccgGGGGGCa -3' miRNA: 3'- cgUCGCGUGCUUGCaGCGC-------UCCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 68796 | 0.78 | 0.361985 |
Target: 5'- gGCGGcCGCGCGAGCGggccgaCGgGGGGAACa -3' miRNA: 3'- -CGUC-GCGUGCUUGCa-----GCgCUCCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 47880 | 0.75 | 0.48645 |
Target: 5'- cGCAGCGCGCGcGCGcccgCGCGccGGGGCg -3' miRNA: 3'- -CGUCGCGUGCuUGCa---GCGCu-CCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 36184 | 0.74 | 0.554802 |
Target: 5'- gGCGGUGCGCGGcgaggccGCGUa-CGAGGGGCUg -3' miRNA: 3'- -CGUCGCGUGCU-------UGCAgcGCUCCUUGA- -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 5723 | 0.74 | 0.576204 |
Target: 5'- cGCAGCagGCGGGCGUCGCaucaGGGGACg -3' miRNA: 3'- -CGUCGcgUGCUUGCAGCGc---UCCUUGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 32818 | 0.78 | 0.370117 |
Target: 5'- aGC-GCGCGCGAGCG-CGCGAGGcccGCg -3' miRNA: 3'- -CGuCGCGUGCUUGCaGCGCUCCu--UGa -5' |
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6369 | 3' | -54.5 | NC_001847.1 | + | 1225 | 0.76 | 0.44869 |
Target: 5'- uUAGCGCGCGGGCGccCGUGuGGGACa -3' miRNA: 3'- cGUCGCGUGCUUGCa-GCGCuCCUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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