miRNA display CGI


Results 1 - 20 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 3' -54.5 NC_001847.1 + 113347 1.1 0.003168
Target:  5'- gGCAGCGCACGAACGUCGCGAGGAACUg -3'
miRNA:   3'- -CGUCGCGUGCUUGCAGCGCUCCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 29113 0.82 0.225831
Target:  5'- gGCGGCGCGCGAGCGgcugCGCGAGcuGGCg -3'
miRNA:   3'- -CGUCGCGUGCUUGCa---GCGCUCc-UUGa -5'
6369 3' -54.5 NC_001847.1 + 131926 0.82 0.225831
Target:  5'- gGCGGCGCGCGAGCGgcugCGCGAGcuGGCg -3'
miRNA:   3'- -CGUCGCGUGCUUGCa---GCGCUCc-UUGa -5'
6369 3' -54.5 NC_001847.1 + 69206 0.81 0.231466
Target:  5'- cCAGCGCcUGGGCGUcCGCGGGGAACg -3'
miRNA:   3'- cGUCGCGuGCUUGCA-GCGCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 75485 0.81 0.23722
Target:  5'- -gAGCGCACGGGCGggCGCGAGcGGGCUc -3'
miRNA:   3'- cgUCGCGUGCUUGCa-GCGCUC-CUUGA- -5'
6369 3' -54.5 NC_001847.1 + 68796 0.78 0.361985
Target:  5'- gGCGGcCGCGCGAGCGggccgaCGgGGGGAACa -3'
miRNA:   3'- -CGUC-GCGUGCUUGCa-----GCgCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 46616 0.78 0.361985
Target:  5'- cGCGGCGCACGAGCGUgGUGA--AGCa -3'
miRNA:   3'- -CGUCGCGUGCUUGCAgCGCUccUUGa -5'
6369 3' -54.5 NC_001847.1 + 32818 0.78 0.370117
Target:  5'- aGC-GCGCGCGAGCG-CGCGAGGcccGCg -3'
miRNA:   3'- -CGuCGCGUGCUUGCaGCGCUCCu--UGa -5'
6369 3' -54.5 NC_001847.1 + 123099 0.77 0.418792
Target:  5'- cGCAGCGCGCaGGGCGUCcagcgcuccgccggGCaGAGGGGCg -3'
miRNA:   3'- -CGUCGCGUG-CUUGCAG--------------CG-CUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 113410 0.77 0.42146
Target:  5'- gGCAGCGUA---GCGUCGgGGGGAACa -3'
miRNA:   3'- -CGUCGCGUgcuUGCAGCgCUCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 12817 0.77 0.42146
Target:  5'- cGUGGCGCGCGAGCGgCGCGcuuGGGAGa- -3'
miRNA:   3'- -CGUCGCGUGCUUGCaGCGC---UCCUUga -5'
6369 3' -54.5 NC_001847.1 + 120510 0.76 0.430427
Target:  5'- aGCGGCGCGCGAGCGcCGCGGucGAAa- -3'
miRNA:   3'- -CGUCGCGUGCUUGCaGCGCUc-CUUga -5'
6369 3' -54.5 NC_001847.1 + 1225 0.76 0.44869
Target:  5'- uUAGCGCGCGGGCGccCGUGuGGGACa -3'
miRNA:   3'- cGUCGCGUGCUUGCa-GCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 25213 0.76 0.457981
Target:  5'- cGCGGCcggcaaagaGCAUGAucgGCGUCGCGGGGAcaACg -3'
miRNA:   3'- -CGUCG---------CGUGCU---UGCAGCGCUCCU--UGa -5'
6369 3' -54.5 NC_001847.1 + 44450 0.75 0.48645
Target:  5'- cGCGGCGCGCGGcACGcgCGCGAGacAGCUa -3'
miRNA:   3'- -CGUCGCGUGCU-UGCa-GCGCUCc-UUGA- -5'
6369 3' -54.5 NC_001847.1 + 47880 0.75 0.48645
Target:  5'- cGCAGCGCGCGcGCGcccgCGCGccGGGGCg -3'
miRNA:   3'- -CGUCGCGUGCuUGCa---GCGCu-CCUUGa -5'
6369 3' -54.5 NC_001847.1 + 122142 0.75 0.496126
Target:  5'- cCGGCGCGCaGGGCGcCGCGcGGGACg -3'
miRNA:   3'- cGUCGCGUG-CUUGCaGCGCuCCUUGa -5'
6369 3' -54.5 NC_001847.1 + 124725 0.75 0.496126
Target:  5'- gGCGGCaGCGCGAAcCG-CGCGGGGGAg- -3'
miRNA:   3'- -CGUCG-CGUGCUU-GCaGCGCUCCUUga -5'
6369 3' -54.5 NC_001847.1 + 74443 0.75 0.504909
Target:  5'- gGCGGCGCACGAcgcCGUgGCGcugcaguacgagcGGGGGCUg -3'
miRNA:   3'- -CGUCGCGUGCUu--GCAgCGC-------------UCCUUGA- -5'
6369 3' -54.5 NC_001847.1 + 43551 0.75 0.505889
Target:  5'- -aAGCGCcgccGCGAGCGcCGCGAGGAu-- -3'
miRNA:   3'- cgUCGCG----UGCUUGCaGCGCUCCUuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.