miRNA display CGI


Results 21 - 40 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 2426 0.71 0.395147
Target:  5'- gGGGCCCCccGCGGCgGCCGGCAgGg-- -3'
miRNA:   3'- aCUCGGGGu-CGCUG-CGGUCGUgCagc -5'
6369 5' -60.7 NC_001847.1 + 2457 0.66 0.64827
Target:  5'- cGAGCUCCcgaucgagcgggcGGCGGCGCCcccGCcgccgugugaagACGUCGc -3'
miRNA:   3'- aCUCGGGG-------------UCGCUGCGGu--CG------------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 2744 0.73 0.311185
Target:  5'- -cGGCCCCcggcccggcgcGGCGGCGCCGGCGCcggCGc -3'
miRNA:   3'- acUCGGGG-----------UCGCUGCGGUCGUGca-GC- -5'
6369 5' -60.7 NC_001847.1 + 2812 0.71 0.362977
Target:  5'- -cGGCCgCCAGCcGCGCCGGCACcUCc -3'
miRNA:   3'- acUCGG-GGUCGcUGCGGUCGUGcAGc -5'
6369 5' -60.7 NC_001847.1 + 2843 0.66 0.689054
Target:  5'- cGGGCUgaaCAGCGcgcGCGCCAGCGCc--- -3'
miRNA:   3'- aCUCGGg--GUCGC---UGCGGUCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 2919 0.66 0.659255
Target:  5'- gGGGCCacgguCC-GCGcCGCCAGCGCGg-- -3'
miRNA:   3'- aCUCGG-----GGuCGCuGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 3060 0.73 0.297457
Target:  5'- cGcGCUCCGgguGCGcCGCCAGCGCGUCc -3'
miRNA:   3'- aCuCGGGGU---CGCuGCGGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 3141 0.78 0.148237
Target:  5'- gGAG-CCCGGCGGCGCCGGCgGCG-CGg -3'
miRNA:   3'- aCUCgGGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 3416 0.71 0.403473
Target:  5'- aGAGCagCCCGGgGGCGCCAGgCGCagcccaggggGUCGa -3'
miRNA:   3'- aCUCG--GGGUCgCUGCGGUC-GUG----------CAGC- -5'
6369 5' -60.7 NC_001847.1 + 3711 0.72 0.332669
Target:  5'- cGGGCCCC-GCGGcCGCCgcguAGCGCG-CGg -3'
miRNA:   3'- aCUCGGGGuCGCU-GCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 3865 0.77 0.159775
Target:  5'- cGGGCCcuCCAGCGGCGgCGGCcCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCUGCgGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 3881 0.66 0.679155
Target:  5'- cGcAGCuCCCAGCGGagcgaGCCGuuGCGCG-CGg -3'
miRNA:   3'- aC-UCG-GGGUCGCUg----CGGU--CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 3895 0.66 0.689054
Target:  5'- cGGcGCCgCGGCGuaGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGgGUCGCugCGGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 3979 0.69 0.501813
Target:  5'- gUGGGCCgUgAGC-ACGCCAGCGCGg-- -3'
miRNA:   3'- -ACUCGG-GgUCGcUGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 4230 0.71 0.411909
Target:  5'- -cGGUgCCGGCGcGCGCCGGCACGa-- -3'
miRNA:   3'- acUCGgGGUCGC-UGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 4544 0.67 0.589344
Target:  5'- -uGGCCCCcGCGuCuCCGGCGcCGUCGu -3'
miRNA:   3'- acUCGGGGuCGCuGcGGUCGU-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 4840 0.68 0.540148
Target:  5'- gGGGCCgCCGGCGauaauguaugGCGCCGGgACGg-- -3'
miRNA:   3'- aCUCGG-GGUCGC----------UGCGGUCgUGCagc -5'
6369 5' -60.7 NC_001847.1 + 5651 0.69 0.473861
Target:  5'- aGAGCCCgucCAGCGgaugcGCGCCGucGCGCG-CGg -3'
miRNA:   3'- aCUCGGG---GUCGC-----UGCGGU--CGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 5924 0.67 0.599297
Target:  5'- cGGGCCCauUAGCGGuCGCCGcgagcaagcGCGCGUaCGu -3'
miRNA:   3'- aCUCGGG--GUCGCU-GCGGU---------CGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 6342 0.67 0.599297
Target:  5'- gGuGCCCCGGCGgcaaccGCGCCGcGgGCGUa- -3'
miRNA:   3'- aCuCGGGGUCGC------UGCGGU-CgUGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.