miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 148 0.69 0.511291
Target:  5'- cGGGCCCCGGCcggGGgGCCGGgguucUGCGUCu -3'
miRNA:   3'- aCUCGGGGUCG---CUgCGGUC-----GUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 273 0.66 0.679155
Target:  5'- cGAGCCCgGGgGcCGCCGagcccGCGCGggCGc -3'
miRNA:   3'- aCUCGGGgUCgCuGCGGU-----CGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 375 0.66 0.679155
Target:  5'- --cGCCCC-GCG-CGCC-GCGCGcCGg -3'
miRNA:   3'- acuCGGGGuCGCuGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 748 0.66 0.649269
Target:  5'- cGGGCCCCccuagGGCGAgGCCGGCc----- -3'
miRNA:   3'- aCUCGGGG-----UCGCUgCGGUCGugcagc -5'
6369 5' -60.7 NC_001847.1 + 774 0.8 0.11216
Target:  5'- --cGCCgCCGGCGGCGCCGGCcuCGUCGu -3'
miRNA:   3'- acuCGG-GGUCGCUGCGGUCGu-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 897 0.66 0.659255
Target:  5'- gGGGCCgCC-GCGGcCGCCGGC-CGcCGc -3'
miRNA:   3'- aCUCGG-GGuCGCU-GCGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 986 0.66 0.679155
Target:  5'- gGGGCuUCCGccGCGGCGgCGGCACG-CGc -3'
miRNA:   3'- aCUCG-GGGU--CGCUGCgGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 1116 0.69 0.492412
Target:  5'- cGuGCCCCuGCGACGCUGGCGa---- -3'
miRNA:   3'- aCuCGGGGuCGCUGCGGUCGUgcagc -5'
6369 5' -60.7 NC_001847.1 + 1124 0.67 0.589344
Target:  5'- -cGGCCUCcagcaccagcGGCGGCGCCucGGCGCG-CGg -3'
miRNA:   3'- acUCGGGG----------UCGCUGCGG--UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 1271 0.7 0.429103
Target:  5'- cGAGCCCCcagcgguuGGCGGCGCgguGGCugGcCGc -3'
miRNA:   3'- aCUCGGGG--------UCGCUGCGg--UCGugCaGC- -5'
6369 5' -60.7 NC_001847.1 + 1334 0.79 0.118044
Target:  5'- cGAGCCCCAGCGccGCGCCcuGCGCGg-- -3'
miRNA:   3'- aCUCGGGGUCGC--UGCGGu-CGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 1437 0.72 0.325389
Target:  5'- cGGGCCCaggcGCGugGCCAccguguagcGCACGUUGc -3'
miRNA:   3'- aCUCGGGgu--CGCugCGGU---------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 1484 0.68 0.544038
Target:  5'- aGAGCCgCAGCGGCGgCGccucgggguagagccGCGCGUa- -3'
miRNA:   3'- aCUCGGgGUCGCUGCgGU---------------CGUGCAgc -5'
6369 5' -60.7 NC_001847.1 + 1569 0.73 0.297457
Target:  5'- cGAgGCCagcaCGGCGcGCGCCAGCGCGcCGc -3'
miRNA:   3'- aCU-CGGg---GUCGC-UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 1794 0.67 0.639271
Target:  5'- -aGGUCCCGGgGAUGUacuccucgaaaGGCGCGUCGc -3'
miRNA:   3'- acUCGGGGUCgCUGCGg----------UCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 1891 0.68 0.540148
Target:  5'- -cGGUugCCCAGCGcCGCgAGCGCGUgCGa -3'
miRNA:   3'- acUCG--GGGUCGCuGCGgUCGUGCA-GC- -5'
6369 5' -60.7 NC_001847.1 + 1919 0.67 0.589344
Target:  5'- aGAGCCCgccgcggcgCGGCGGCcacucgggccGCCGGCGC-UCGu -3'
miRNA:   3'- aCUCGGG---------GUCGCUG----------CGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 2096 0.71 0.392671
Target:  5'- gGGGCCCgcgCGGCGGCgggccgcgaucucgGCCAGCGCcUCGg -3'
miRNA:   3'- aCUCGGG---GUCGCUG--------------CGGUCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 2316 0.73 0.297457
Target:  5'- aUGGGCCCCAGC-ACGCgGGCGgGcagCGg -3'
miRNA:   3'- -ACUCGGGGUCGcUGCGgUCGUgCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 2345 0.69 0.520842
Target:  5'- -cGGCUCCcGCcGCGCCGGCccggccGCGUCGg -3'
miRNA:   3'- acUCGGGGuCGcUGCGGUCG------UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.