miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 113382 1.07 0.0012
Target:  5'- gUGAGCCCCAGCGACGCCAGCACGUCGc -3'
miRNA:   3'- -ACUCGGGGUCGCUGCGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 17801 0.84 0.058497
Target:  5'- cGGGCCCCAGCGggcgggaggGCGCCAugccagugcggcGCACGUCGg -3'
miRNA:   3'- aCUCGGGGUCGC---------UGCGGU------------CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 8876 0.82 0.082259
Target:  5'- uUGGGCCCCAGa-GCGCCAGCGaGUCGg -3'
miRNA:   3'- -ACUCGGGGUCgcUGCGGUCGUgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 91304 0.81 0.084428
Target:  5'- cGGGCUCCAGCaGCGCCAGCGCGg-- -3'
miRNA:   3'- aCUCGGGGUCGcUGCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 774 0.8 0.11216
Target:  5'- --cGCCgCCGGCGGCGCCGGCcuCGUCGu -3'
miRNA:   3'- acuCGG-GGUCGCUGCGGUCGu-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 96014 0.8 0.11216
Target:  5'- cGAGCCCCAGCGcggcGCGUCGGCcgccGCGUUGc -3'
miRNA:   3'- aCUCGGGGUCGC----UGCGGUCG----UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105955 0.8 0.11216
Target:  5'- -cAGCCCCAGCaACGgCAGCACGUCc -3'
miRNA:   3'- acUCGGGGUCGcUGCgGUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 103587 0.8 0.11216
Target:  5'- --cGCCgCCGGCGGCGCCGGCcuCGUCGu -3'
miRNA:   3'- acuCGG-GGUCGCUGCGGUCGu-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 1334 0.79 0.118044
Target:  5'- cGAGCCCCAGCGccGCGCCcuGCGCGg-- -3'
miRNA:   3'- aCUCGGGGUCGC--UGCGGu-CGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 104147 0.79 0.118044
Target:  5'- cGAGCCCCAGCGccGCGCCcuGCGCGg-- -3'
miRNA:   3'- aCUCGGGGUCGC--UGCGGu-CGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 99774 0.79 0.121093
Target:  5'- aGcGCUCCAGCuGCGCCAGCGCGcUCGg -3'
miRNA:   3'- aCuCGGGGUCGcUGCGGUCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 29361 0.79 0.124215
Target:  5'- -cGGCCCCGGCGGCGCU-GCGCGcCGa -3'
miRNA:   3'- acUCGGGGUCGCUGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 132174 0.79 0.124215
Target:  5'- -cGGCCCCGGCGGCGCU-GCGCGcCGa -3'
miRNA:   3'- acUCGGGGUCGCUGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 77932 0.79 0.127411
Target:  5'- cGAGCCCCGGCG--GCCGGgGCGUCc -3'
miRNA:   3'- aCUCGGGGUCGCugCGGUCgUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 68375 0.78 0.137462
Target:  5'- cGAGCCCCgaAGCGACGCCgagcgacacgaAGCAC-UCGg -3'
miRNA:   3'- aCUCGGGG--UCGCUGCGG-----------UCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 3141 0.78 0.148237
Target:  5'- gGAG-CCCGGCGGCGCCGGCgGCG-CGg -3'
miRNA:   3'- aCUCgGGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 98781 0.78 0.148237
Target:  5'- cGGGCCgCGGCGGCGCCgcguGGCGCGcCGc -3'
miRNA:   3'- aCUCGGgGUCGCUGCGG----UCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 105954 0.78 0.148237
Target:  5'- gGAG-CCCGGCGGCGCCGGCgGCG-CGg -3'
miRNA:   3'- aCUCgGGGUCGCUGCGGUCG-UGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 3865 0.77 0.159775
Target:  5'- cGGGCCcuCCAGCGGCGgCGGCcCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCUGCgGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 106678 0.77 0.159775
Target:  5'- cGGGCCcuCCAGCGGCGgCGGCcCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCUGCgGUCGuGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.