miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 8876 0.82 0.082259
Target:  5'- uUGGGCCCCAGa-GCGCCAGCGaGUCGg -3'
miRNA:   3'- -ACUCGGGGUCgcUGCGGUCGUgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 48398 0.75 0.224887
Target:  5'- cGGGCCUCGGCGGCaaaGCgGGaCGCGUCGc -3'
miRNA:   3'- aCUCGGGGUCGCUG---CGgUC-GUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 83114 0.74 0.241491
Target:  5'- aUGAGCCCCuGGCGcgaGCGCUAGUGCG-CGc -3'
miRNA:   3'- -ACUCGGGG-UCGC---UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 131904 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 77932 0.79 0.127411
Target:  5'- cGAGCCCCGGCG--GCCGGgGCGUCc -3'
miRNA:   3'- aCUCGGGGUCGCugCGGUCgUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 68375 0.78 0.137462
Target:  5'- cGAGCCCCgaAGCGACGCCgagcgacacgaAGCAC-UCGg -3'
miRNA:   3'- aCUCGGGG--UCGCUGCGG-----------UCGUGcAGC- -5'
6369 5' -60.7 NC_001847.1 + 106678 0.77 0.159775
Target:  5'- cGGGCCcuCCAGCGGCGgCGGCcCGUCGc -3'
miRNA:   3'- aCUCGG--GGUCGCUGCgGUCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 9725 0.76 0.180811
Target:  5'- cGGGuCCuCCGGCGGCGCCGGgGCaGUCGc -3'
miRNA:   3'- aCUC-GG-GGUCGCUGCGGUCgUG-CAGC- -5'
6369 5' -60.7 NC_001847.1 + 131203 0.76 0.204265
Target:  5'- cGGcGCCCCccccgccGCGGCGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGGGu------CGCUGCGGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 91731 0.75 0.219572
Target:  5'- cGAGgCCCAGCugcaGCGCCcugcGCGCGUCGg -3'
miRNA:   3'- aCUCgGGGUCGc---UGCGGu---CGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 60837 0.75 0.209262
Target:  5'- gGGGCgCCCGcggcgcugcGCGGCGCCAGgGCGUCc -3'
miRNA:   3'- aCUCG-GGGU---------CGCUGCGGUCgUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 56887 0.76 0.189893
Target:  5'- cGGGCCCgccggcgaCGGCGACGCCGGCGgG-CGg -3'
miRNA:   3'- aCUCGGG--------GUCGCUGCGGUCGUgCaGC- -5'
6369 5' -60.7 NC_001847.1 + 103587 0.8 0.11216
Target:  5'- --cGCCgCCGGCGGCGCCGGCcuCGUCGu -3'
miRNA:   3'- acuCGG-GGUCGCUGCGGUCGu-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 49474 0.75 0.214364
Target:  5'- cGAGCgCCuGCG-CGCCAGCACGgccgCGc -3'
miRNA:   3'- aCUCGgGGuCGCuGCGGUCGUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 104147 0.79 0.118044
Target:  5'- cGAGCCCCAGCGccGCGCCcuGCGCGg-- -3'
miRNA:   3'- aCUCGGGGUCGC--UGCGGu-CGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 81185 0.76 0.185303
Target:  5'- aGGGCUCgCGGCGGCGCCAGC-CGgcgCGc -3'
miRNA:   3'- aCUCGGG-GUCGCUGCGGUCGuGCa--GC- -5'
6369 5' -60.7 NC_001847.1 + 95751 0.75 0.214364
Target:  5'- gGAGCCCgGcCGGCGCCGGCuccccgacgGCGUCGc -3'
miRNA:   3'- aCUCGGGgUcGCUGCGGUCG---------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 18792 0.75 0.235846
Target:  5'- cGAGCUCCgcggcggcGGCGcGCGCCAGCGCG-CGc -3'
miRNA:   3'- aCUCGGGG--------UCGC-UGCGGUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 132174 0.79 0.124215
Target:  5'- -cGGCCCCGGCGGCGCU-GCGCGcCGa -3'
miRNA:   3'- acUCGGGGUCGCUGCGGuCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 105954 0.78 0.148237
Target:  5'- gGAG-CCCGGCGGCGCCGGCgGCG-CGg -3'
miRNA:   3'- aCUCgGGGUCGCUGCGGUCG-UGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.