miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 131904 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 65804 0.66 0.689054
Target:  5'- -cAGCaCCAGCGcCGCCAGCAgCGccCGa -3'
miRNA:   3'- acUCGgGGUCGCuGCGGUCGU-GCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 55561 0.66 0.689054
Target:  5'- ---uUCCCGGaCGGCGCCcgcAGCACGaUCGu -3'
miRNA:   3'- acucGGGGUC-GCUGCGG---UCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 45348 0.66 0.689054
Target:  5'- --uGCCaCGGCGuuCGCCAGCGCGa-- -3'
miRNA:   3'- acuCGGgGUCGCu-GCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 37971 0.66 0.689054
Target:  5'- -uGGCCCgCGuGCG-CGCCGGCAgUGUCu -3'
miRNA:   3'- acUCGGG-GU-CGCuGCGGUCGU-GCAGc -5'
6369 5' -60.7 NC_001847.1 + 3895 0.66 0.689054
Target:  5'- cGGcGCCgCGGCGuaGCCAGCGCGggCGc -3'
miRNA:   3'- aCU-CGGgGUCGCugCGGUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 2843 0.66 0.689054
Target:  5'- cGGGCUgaaCAGCGcgcGCGCCAGCGCc--- -3'
miRNA:   3'- aCUCGGg--GUCGC---UGCGGUCGUGcagc -5'
6369 5' -60.7 NC_001847.1 + 129236 0.66 0.689054
Target:  5'- aUGGGCCCgGGCGcacaaucuGCGaCGGCGCGg-- -3'
miRNA:   3'- -ACUCGGGgUCGC--------UGCgGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 114168 0.66 0.689054
Target:  5'- gGAGgCCUAGUGcgcGCGCCcGCuuauagGCGUCGa -3'
miRNA:   3'- aCUCgGGGUCGC---UGCGGuCG------UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 80777 0.66 0.689054
Target:  5'- --cGCCgCAGCagcuCGCgCAGCGCGUCc -3'
miRNA:   3'- acuCGGgGUCGcu--GCG-GUCGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 84766 0.66 0.689054
Target:  5'- -aAGCCggCGGCGGCGCCGuccuuaGCGUCGg -3'
miRNA:   3'- acUCGGg-GUCGCUGCGGUcg----UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 97828 0.66 0.689054
Target:  5'- cGGGCgCguGCcGCcacacgGCUAGCACGUCGg -3'
miRNA:   3'- aCUCGgGguCGcUG------CGGUCGUGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 105077 0.66 0.698908
Target:  5'- -cAGCacuCCCAGCcgcgccaccGCGCCGGCaACGUCGc -3'
miRNA:   3'- acUCG---GGGUCGc--------UGCGGUCG-UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 91814 0.66 0.698908
Target:  5'- cGcGCCgCgCGGCGAUGgCAGCACGgcagCGc -3'
miRNA:   3'- aCuCGG-G-GUCGCUGCgGUCGUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 82127 0.66 0.698908
Target:  5'- cGAGCgCgCAGCGGcCGCC-GC-UGUCGg -3'
miRNA:   3'- aCUCGgG-GUCGCU-GCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 66057 0.66 0.698908
Target:  5'- --cGUCCgCGcGCGGCGCCAGaCGCGgCGa -3'
miRNA:   3'- acuCGGG-GU-CGCUGCGGUC-GUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 29091 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 57680 0.66 0.698908
Target:  5'- cGGGCgCCCGGCGcccGCcCCAGCcCGcCGa -3'
miRNA:   3'- aCUCG-GGGUCGC---UGcGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 51571 0.66 0.698908
Target:  5'- aGcGCUUCcGCGGCGCCggGGCAgcCGUCGg -3'
miRNA:   3'- aCuCGGGGuCGCUGCGG--UCGU--GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 132971 0.66 0.689054
Target:  5'- --cGCCCaGGCGGCGCgGGCGCuG-CGa -3'
miRNA:   3'- acuCGGGgUCGCUGCGgUCGUG-CaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.