miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 100889 0.66 0.753034
Target:  5'- -cGCGCC-GGUCugcGCCUC-GCGCCGc -3'
miRNA:   3'- cuCGCGGaCUAGc--UGGAGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 104867 0.66 0.753034
Target:  5'- cAGCGCUUGuGUCG---UCUGCGCCGc -3'
miRNA:   3'- cUCGCGGAC-UAGCuggAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 43799 0.66 0.761556
Target:  5'- cGGGCGCgcuacuaCUGAcgcUCGACggCcGCGCCGAa -3'
miRNA:   3'- -CUCGCG-------GACU---AGCUGgaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 10697 0.66 0.762498
Target:  5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3'
miRNA:   3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 101464 0.66 0.762498
Target:  5'- cGAGCGCCUG--CG-CCUCUagccccGCGCgGGc -3'
miRNA:   3'- -CUCGCGGACuaGCuGGAGA------CGCGgCU- -5'
6371 3' -59.1 NC_001847.1 + 114976 0.66 0.762498
Target:  5'- -cGCGCCc-GUUG-CCUgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGacUAGCuGGAgaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 50036 0.66 0.766252
Target:  5'- -cGCGCCgUGAUgaucaaccuggccggCGGCCUgCUGgCGCUGAu -3'
miRNA:   3'- cuCGCGG-ACUA---------------GCUGGA-GAC-GCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 88281 0.66 0.743467
Target:  5'- gGAGCGCU---UCG-CCUgCUGgGCCGAc -3'
miRNA:   3'- -CUCGCGGacuAGCuGGA-GACgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 3978 0.66 0.743467
Target:  5'- aGGGCGCCgGGggccgggcgcgCGGCCccgCgggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa----------GCUGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 101851 0.66 0.724054
Target:  5'- -uGCGCCUGccgcgagcagGUCGcggaggagcucGCCUUUGCGCgCGGa -3'
miRNA:   3'- cuCGCGGAC----------UAGC-----------UGGAGACGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 27872 0.66 0.733803
Target:  5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3'
miRNA:   3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 49440 0.66 0.733803
Target:  5'- uGGCGCUUGuggcucgcucagGUCGGCgUCUuCGCCGGc -3'
miRNA:   3'- cUCGCGGAC------------UAGCUGgAGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 130518 0.67 0.70433
Target:  5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 86731 0.67 0.714226
Target:  5'- cGAGCGCCgg--CGACgcgucccgCUUUGCcGCCGAg -3'
miRNA:   3'- -CUCGCGGacuaGCUG--------GAGACG-CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 34548 0.67 0.714226
Target:  5'- cGGGCGCUUGGggccacaGGCCgccaagCUGCacGCCGAc -3'
miRNA:   3'- -CUCGCGGACUag-----CUGGa-----GACG--CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 19010 0.67 0.70433
Target:  5'- cGGCGCCc--UCGGCCUCUucGCGCgUGAc -3'
miRNA:   3'- cUCGCGGacuAGCUGGAGA--CGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 62437 0.67 0.694375
Target:  5'- uGAGCGUgUuuucGUCGGCgcggCUCUGCGCCGc -3'
miRNA:   3'- -CUCGCGgAc---UAGCUG----GAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 68909 0.67 0.691378
Target:  5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3'
miRNA:   3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 949 0.67 0.674319
Target:  5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3'
miRNA:   3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 1094 0.67 0.664236
Target:  5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.