Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 47424 | 0.65 | 0.769055 |
Target: 5'- cGGCGUCUGcgacgucGUCGGCUUCgccgccgccgcgGCGCCGc -3' miRNA: 3'- cUCGCGGAC-------UAGCUGGAGa-----------CGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 49440 | 0.66 | 0.733803 |
Target: 5'- uGGCGCUUGuggcucgcucagGUCGGCgUCUuCGCCGGc -3' miRNA: 3'- cUCGCGGAC------------UAGCUGgAGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 27872 | 0.66 | 0.733803 |
Target: 5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3' miRNA: 3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 101851 | 0.66 | 0.724054 |
Target: 5'- -uGCGCCUGccgcgagcagGUCGcggaggagcucGCCUUUGCGCgCGGa -3' miRNA: 3'- cuCGCGGAC----------UAGC-----------UGGAGACGCG-GCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 33021 | 0.66 | 0.724054 |
Target: 5'- gGAGUGCCgc--CGcCCUCUcCGCCGAg -3' miRNA: 3'- -CUCGCGGacuaGCuGGAGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 45238 | 0.66 | 0.724054 |
Target: 5'- cAGCGUUUGA-CGA-CUUUGCGCCGc -3' miRNA: 3'- cUCGCGGACUaGCUgGAGACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 52257 | 0.66 | 0.724054 |
Target: 5'- -cGCGCCgcuUCGugCUCgcgugcccgcGCGCCGGc -3' miRNA: 3'- cuCGCGGacuAGCugGAGa---------CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 100725 | 0.66 | 0.733803 |
Target: 5'- -uGCGCCgccu---CUUCUGCGCCGAg -3' miRNA: 3'- cuCGCGGacuagcuGGAGACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 39313 | 0.66 | 0.733803 |
Target: 5'- -cGUGCCUGGcUUGcCC-CUGCcGCCGAg -3' miRNA: 3'- cuCGCGGACU-AGCuGGaGACG-CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 3978 | 0.66 | 0.743467 |
Target: 5'- aGGGCGCCgGGggccgggcgcgCGGCCccgCgggGCGCCGGg -3' miRNA: 3'- -CUCGCGGaCUa----------GCUGGa--Ga--CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 88281 | 0.66 | 0.743467 |
Target: 5'- gGAGCGCU---UCG-CCUgCUGgGCCGAc -3' miRNA: 3'- -CUCGCGGacuAGCuGGA-GACgCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 123061 | 0.66 | 0.747306 |
Target: 5'- cGGGCGCCgGAcccgcggcgcuccgCGGCCUCgGCGuCCGc -3' miRNA: 3'- -CUCGCGGaCUa-------------GCUGGAGaCGC-GGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 50036 | 0.66 | 0.766252 |
Target: 5'- -cGCGCCgUGAUgaucaaccuggccggCGGCCUgCUGgCGCUGAu -3' miRNA: 3'- cuCGCGG-ACUA---------------GCUGGA-GAC-GCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 114976 | 0.66 | 0.762498 |
Target: 5'- -cGCGCCc-GUUG-CCUgaGCGCCGAg -3' miRNA: 3'- cuCGCGGacUAGCuGGAgaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 101464 | 0.66 | 0.762498 |
Target: 5'- cGAGCGCCUG--CG-CCUCUagccccGCGCgGGc -3' miRNA: 3'- -CUCGCGGACuaGCuGGAGA------CGCGgCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 10697 | 0.66 | 0.762498 |
Target: 5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3' miRNA: 3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 43799 | 0.66 | 0.761556 |
Target: 5'- cGGGCGCgcuacuaCUGAcgcUCGACggCcGCGCCGAa -3' miRNA: 3'- -CUCGCG-------GACU---AGCUGgaGaCGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 104867 | 0.66 | 0.753034 |
Target: 5'- cAGCGCUUGuGUCG---UCUGCGCCGc -3' miRNA: 3'- cUCGCGGAC-UAGCuggAGACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 100889 | 0.66 | 0.753034 |
Target: 5'- -cGCGCC-GGUCugcGCCUC-GCGCCGc -3' miRNA: 3'- cuCGCGGaCUAGc--UGGAGaCGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 98885 | 0.66 | 0.753034 |
Target: 5'- -uGCGCCUGggCGGCC-CaG-GCCGGg -3' miRNA: 3'- cuCGCGGACuaGCUGGaGaCgCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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