miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 111425 1.08 0.001464
Target:  5'- aGAGCGCCUGAUCGACCUCUGCGCCGAc -3'
miRNA:   3'- -CUCGCGGACUAGCUGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 118212 0.77 0.213188
Target:  5'- -cGCGCaCUGAgcagacCGGCgUCUGCGCCGAg -3'
miRNA:   3'- cuCGCG-GACUa-----GCUGgAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 117297 0.75 0.258364
Target:  5'- -cGCGCCcGA-CGACCUCUGUuucGCCGAc -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGACG---CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 84017 0.75 0.258364
Target:  5'- aGAGCGUgUGGUUGGCCUCguacaGCGCCu- -3'
miRNA:   3'- -CUCGCGgACUAGCUGGAGa----CGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 100326 0.75 0.270817
Target:  5'- cAGCGCCcGGUCGGCCUgCcGCGCCa- -3'
miRNA:   3'- cUCGCGGaCUAGCUGGA-GaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 117578 0.75 0.283749
Target:  5'- gGGGCGCgCUGccCGGCCaaaacgUCUGCGCCGGg -3'
miRNA:   3'- -CUCGCG-GACuaGCUGG------AGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 79571 0.74 0.311067
Target:  5'- gGGGCGCCgGGcucgCGGCCUCUucgggcggggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa---GCUGGAGA----------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 94027 0.74 0.311067
Target:  5'- -cGCGCCUgccggGAUCGACCcuagUGCGCCGGc -3'
miRNA:   3'- cuCGCGGA-----CUAGCUGGag--ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 74143 0.74 0.325458
Target:  5'- cGGCGCCgauggCGGCCUCgacgGCGCCGu -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 82756 0.73 0.332837
Target:  5'- cGGCGCCguaGA-CGGCCgUCUGCGCCa- -3'
miRNA:   3'- cUCGCGGa--CUaGCUGG-AGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 100505 0.73 0.355705
Target:  5'- -cGCGCCgc-UCGGCCUCggcgcgcagGCGCCGGa -3'
miRNA:   3'- cuCGCGGacuAGCUGGAGa--------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 101519 0.73 0.371554
Target:  5'- cGGGUGUUUG-UCGACCUCUaGUGCUGAc -3'
miRNA:   3'- -CUCGCGGACuAGCUGGAGA-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 44083 0.72 0.396213
Target:  5'- -cGUGCCUGcugCGGCgUCUGCGCCc- -3'
miRNA:   3'- cuCGCGGACua-GCUGgAGACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 105621 0.72 0.404665
Target:  5'- -cGCGCCgcgcGggCGAgCUCUGCGgCCGAa -3'
miRNA:   3'- cuCGCGGa---CuaGCUgGAGACGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 2577 0.72 0.404665
Target:  5'- cGGGCGCCUGcgCGGCCgCcGCgGCCGc -3'
miRNA:   3'- -CUCGCGGACuaGCUGGaGaCG-CGGCu -5'
6371 3' -59.1 NC_001847.1 + 54409 0.72 0.404665
Target:  5'- cGGGCGCCgccgcGGUUGGCCUCgGCGgcCCGGg -3'
miRNA:   3'- -CUCGCGGa----CUAGCUGGAGaCGC--GGCU- -5'
6371 3' -59.1 NC_001847.1 + 81086 0.71 0.430687
Target:  5'- cGGCGCUggcggCGGCCUCgccgcGCGCCGAc -3'
miRNA:   3'- cUCGCGGacua-GCUGGAGa----CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 66349 0.71 0.430687
Target:  5'- cGGGCGCCgccguggcGAUCGuCCcCgugGCGCCGAa -3'
miRNA:   3'- -CUCGCGGa-------CUAGCuGGaGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 32726 0.71 0.44857
Target:  5'- gGAGCGCCUc-UCGGCCUCcG-GCCGGc -3'
miRNA:   3'- -CUCGCGGAcuAGCUGGAGaCgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 11677 0.7 0.48552
Target:  5'- gGGGCGCUgcAUCGGCCUCaucaGCGCCu- -3'
miRNA:   3'- -CUCGCGGacUAGCUGGAGa---CGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.