miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 949 0.67 0.674319
Target:  5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3'
miRNA:   3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 1094 0.67 0.664236
Target:  5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 2129 0.67 0.714226
Target:  5'- cAGCGCCUcggGGUCGAaggCgaGCGCCGGg -3'
miRNA:   3'- cUCGCGGA---CUAGCUggaGa-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 2577 0.72 0.404665
Target:  5'- cGGGCGCCUGcgCGGCCgCcGCgGCCGc -3'
miRNA:   3'- -CUCGCGGACuaGCUGGaGaCG-CGGCu -5'
6371 3' -59.1 NC_001847.1 + 3978 0.66 0.743467
Target:  5'- aGGGCGCCgGGggccgggcgcgCGGCCccgCgggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa----------GCUGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 4518 0.69 0.583323
Target:  5'- -cGCGUCU--UCGGCCUCgGCGCCc- -3'
miRNA:   3'- cuCGCGGAcuAGCUGGAGaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 8449 0.69 0.563298
Target:  5'- cGGCGCCgGGUCGGaggCgGCGCCGGg -3'
miRNA:   3'- cUCGCGGaCUAGCUggaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 10697 0.66 0.762498
Target:  5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3'
miRNA:   3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 11584 0.69 0.583323
Target:  5'- cGGUGCC-GGUUG-CUUCUGCGCUGGc -3'
miRNA:   3'- cUCGCGGaCUAGCuGGAGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 11677 0.7 0.48552
Target:  5'- gGGGCGCUgcAUCGGCCUCaucaGCGCCu- -3'
miRNA:   3'- -CUCGCGGacUAGCUGGAGa---CGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 13150 0.68 0.623731
Target:  5'- -cGCGUUg---CGACCcagCUGCGCCGAg -3'
miRNA:   3'- cuCGCGGacuaGCUGGa--GACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 19010 0.67 0.70433
Target:  5'- cGGCGCCc--UCGGCCUCUucGCGCgUGAc -3'
miRNA:   3'- cUCGCGGacuAGCUGGAGA--CGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 20092 0.67 0.684368
Target:  5'- cGAGCGCCaGcUgGAgCUCUGCcCCGGa -3'
miRNA:   3'- -CUCGCGGaCuAgCUgGAGACGcGGCU- -5'
6371 3' -59.1 NC_001847.1 + 23864 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 24590 0.67 0.70433
Target:  5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3'
miRNA:   3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 27705 0.67 0.70433
Target:  5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3'
miRNA:   3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 27872 0.66 0.733803
Target:  5'- gGGGCGCCgagGAcgCgGACgUCgcggagUGCGCCGAg -3'
miRNA:   3'- -CUCGCGGa--CUa-G-CUGgAG------ACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 29122 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 30625 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 32560 0.66 0.761556
Target:  5'- cGGCG-CUGggCGACCUggcggacgccaagCUGCGCCu- -3'
miRNA:   3'- cUCGCgGACuaGCUGGA-------------GACGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.