miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 117297 0.75 0.258364
Target:  5'- -cGCGCCcGA-CGACCUCUGUuucGCCGAc -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGACG---CGGCU- -5'
6371 3' -59.1 NC_001847.1 + 78752 0.68 0.613602
Target:  5'- -cGCGCC-GGcCGACCUCcccgacccgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGaCUaGCUGGAGa---------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 126677 0.68 0.633867
Target:  5'- cGAGCGCCgccccCGGCC-CgGCGCCGc -3'
miRNA:   3'- -CUCGCGGacua-GCUGGaGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 113510 0.66 0.762498
Target:  5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3'
miRNA:   3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 54409 0.72 0.404665
Target:  5'- cGGGCGCCgccgcGGUUGGCCUCgGCGgcCCGGg -3'
miRNA:   3'- -CUCGCGGa----CUAGCUGGAGaCGC--GGCU- -5'
6371 3' -59.1 NC_001847.1 + 66349 0.71 0.430687
Target:  5'- cGGGCGCCgccguggcGAUCGuCCcCgugGCGCCGAa -3'
miRNA:   3'- -CUCGCGGa-------CUAGCuGGaGa--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 42679 0.7 0.48552
Target:  5'- -cGCGCUggccAUCGACCggccCUGCGCCGu -3'
miRNA:   3'- cuCGCGGac--UAGCUGGa---GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 34633 0.7 0.494984
Target:  5'- cGGCGCCUGcgCGccgagGCCgagCggcGCGCCGAg -3'
miRNA:   3'- cUCGCGGACuaGC-----UGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 70375 0.69 0.553353
Target:  5'- gGGGCGCCgggGcgCGAgCUC-GCGCUGGc -3'
miRNA:   3'- -CUCGCGGa--CuaGCUgGAGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 107331 0.69 0.583323
Target:  5'- -cGCGUCU--UCGGCCUCgGCGCCc- -3'
miRNA:   3'- cuCGCGGAcuAGCUGGAGaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 121809 0.69 0.563298
Target:  5'- cGGGCGCCUGcUCG-CCgcccGUGCCGGa -3'
miRNA:   3'- -CUCGCGGACuAGCuGGaga-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 88599 0.7 0.533627
Target:  5'- -cGCGgCUGGagGACCUCgcgcGCGCCGc -3'
miRNA:   3'- cuCGCgGACUagCUGGAGa---CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 117578 0.75 0.283749
Target:  5'- gGGGCGCgCUGccCGGCCaaaacgUCUGCGCCGGg -3'
miRNA:   3'- -CUCGCG-GACuaGCUGG------AGACGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 131935 0.69 0.57329
Target:  5'- cGAGCGgCUGcgCGAgCUggcggaccgCUGCGCCGu -3'
miRNA:   3'- -CUCGCgGACuaGCUgGA---------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 101519 0.73 0.371554
Target:  5'- cGGGUGUUUG-UCGACCUCUaGUGCUGAc -3'
miRNA:   3'- -CUCGCGGACuAGCUGGAGA-CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 133438 0.7 0.494984
Target:  5'- cGGCGgCUGAUCGugCUC-GaCGCCGu -3'
miRNA:   3'- cUCGCgGACUAGCugGAGaC-GCGGCu -5'
6371 3' -59.1 NC_001847.1 + 41994 0.69 0.583323
Target:  5'- cGAGCGCUgcGUCGGCgCggaacgaagCUGCGCCGu -3'
miRNA:   3'- -CUCGCGGacUAGCUG-Ga--------GACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 59223 0.68 0.633867
Target:  5'- -uGCGCUUGcacgcGUCGGCCgUCggcgaugGCGCCGGc -3'
miRNA:   3'- cuCGCGGAC-----UAGCUGG-AGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 2577 0.72 0.404665
Target:  5'- cGGGCGCCUGcgCGGCCgCcGCgGCCGc -3'
miRNA:   3'- -CUCGCGGACuaGCUGGaGaCG-CGGCu -5'
6371 3' -59.1 NC_001847.1 + 32726 0.71 0.44857
Target:  5'- gGAGCGCCUc-UCGGCCUCcG-GCCGGc -3'
miRNA:   3'- -CUCGCGGAcuAGCUGGAGaCgCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.