Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6371 | 3' | -59.1 | NC_001847.1 | + | 127403 | 0.67 | 0.70433 |
Target: 5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3' miRNA: 3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 92048 | 0.67 | 0.70433 |
Target: 5'- cGGCGCCUccGggCG-CCUCcGCcGCCGAg -3' miRNA: 3'- cUCGCGGA--CuaGCuGGAGaCG-CGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 24590 | 0.67 | 0.70433 |
Target: 5'- -uGCGCCccguuaaucGAUCGACC-CU-CGCCGAu -3' miRNA: 3'- cuCGCGGa--------CUAGCUGGaGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 111359 | 0.67 | 0.70433 |
Target: 5'- -cGCG-CUGggCGACCUC-GCGCCc- -3' miRNA: 3'- cuCGCgGACuaGCUGGAGaCGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 19010 | 0.67 | 0.70433 |
Target: 5'- cGGCGCCc--UCGGCCUCUucGCGCgUGAc -3' miRNA: 3'- cUCGCGGacuAGCUGGAGA--CGCG-GCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 60027 | 0.67 | 0.70433 |
Target: 5'- aGAGCGUgccGUCGGCCUCUuCGUCGGg -3' miRNA: 3'- -CUCGCGgacUAGCUGGAGAcGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 130518 | 0.67 | 0.70433 |
Target: 5'- cGAGCGCCggcg-GGCCgcccGCGCCGAg -3' miRNA: 3'- -CUCGCGGacuagCUGGaga-CGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 62437 | 0.67 | 0.694375 |
Target: 5'- uGAGCGUgUuuucGUCGGCgcggCUCUGCGCCGc -3' miRNA: 3'- -CUCGCGgAc---UAGCUG----GAGACGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 68909 | 0.67 | 0.691378 |
Target: 5'- cGAGCGCCgccgcgcUGAgguucggcgcggCGGCCgcgggCUGCGCCu- -3' miRNA: 3'- -CUCGCGG-------ACUa-----------GCUGGa----GACGCGGcu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 46601 | 0.67 | 0.684368 |
Target: 5'- --cCGCCgGcgCGGCCUCgcgGCGCaCGAg -3' miRNA: 3'- cucGCGGaCuaGCUGGAGa--CGCG-GCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 33179 | 0.67 | 0.684368 |
Target: 5'- cAGCGgCUGGcCGG-CUCUGCGcCCGAc -3' miRNA: 3'- cUCGCgGACUaGCUgGAGACGC-GGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 20092 | 0.67 | 0.684368 |
Target: 5'- cGAGCGCCaGcUgGAgCUCUGCcCCGGa -3' miRNA: 3'- -CUCGCGGaCuAgCUgGAGACGcGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 949 | 0.67 | 0.674319 |
Target: 5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3' miRNA: 3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 58806 | 0.67 | 0.674319 |
Target: 5'- cAGCGCCUGcgcCGGCgC-CUGgGCCGGu -3' miRNA: 3'- cUCGCGGACua-GCUG-GaGACgCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 103762 | 0.67 | 0.674319 |
Target: 5'- -cGCGCCcGGg-GACgaCUGCGCCGGc -3' miRNA: 3'- cuCGCGGaCUagCUGgaGACGCGGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 43697 | 0.67 | 0.664236 |
Target: 5'- cGGCGCaCUGG-CGugCUUUGCGCgCGc -3' miRNA: 3'- cUCGCG-GACUaGCugGAGACGCG-GCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 83323 | 0.67 | 0.664236 |
Target: 5'- gGGGCGCUUGGcgccuccaUCGACaugcuggUCUGCGaCCGGg -3' miRNA: 3'- -CUCGCGGACU--------AGCUGg------AGACGC-GGCU- -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 103907 | 0.67 | 0.664236 |
Target: 5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3' miRNA: 3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 1094 | 0.67 | 0.664236 |
Target: 5'- cGGGCGCCg---CGGCCgcgggCgGCGCCGc -3' miRNA: 3'- -CUCGCGGacuaGCUGGa----GaCGCGGCu -5' |
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6371 | 3' | -59.1 | NC_001847.1 | + | 88301 | 0.68 | 0.654128 |
Target: 5'- -uGCGCCgcgggggcGGUCGACUUUUGCGCg-- -3' miRNA: 3'- cuCGCGGa-------CUAGCUGGAGACGCGgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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