miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 36184 0.76 0.479142
Target:  5'- gGCGGUGCgCggcgagGCCGcguacGAGGGGCUGCGCg -3'
miRNA:   3'- -UGUCAUGgGa-----UGGC-----UUUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 52133 0.75 0.498642
Target:  5'- gGCGGcGCCCcagcggACCGAcGAGGCCGUGg -3'
miRNA:   3'- -UGUCaUGGGa-----UGGCUuUUCCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 32947 0.75 0.509518
Target:  5'- cGCGGUGCCCgcggacagcgcggugGCCGAcuuggcggcuGAgcuugcggcGGGCCGCGCc -3'
miRNA:   3'- -UGUCAUGGGa--------------UGGCU----------UU---------UCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 131127 0.75 0.512501
Target:  5'- cGCGGUAUgCUGCuCGggGGgcggacuguuaacuuGGCCGCGCu -3'
miRNA:   3'- -UGUCAUGgGAUG-GCuuUU---------------CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 55446 0.75 0.538641
Target:  5'- uGCAGcGCCUggcGCCGGcgGGGCgCGCGCc -3'
miRNA:   3'- -UGUCaUGGGa--UGGCUuuUCCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 14998 0.75 0.538641
Target:  5'- gGCaAGcGCCCcucgGCCGcgguGGGGCCGCGCg -3'
miRNA:   3'- -UG-UCaUGGGa---UGGCuu--UUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 38709 0.74 0.548818
Target:  5'- cCAGUGCCU--CCG---GGGCCGCGCc -3'
miRNA:   3'- uGUCAUGGGauGGCuuuUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 4439 0.74 0.548818
Target:  5'- cGCAGggaaACgCgcacGCCGuGAAAGGCCGCGCg -3'
miRNA:   3'- -UGUCa---UGgGa---UGGC-UUUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 30639 0.74 0.559054
Target:  5'- cGCGGcgGCC--GCCGAAGAGGCgGUGCu -3'
miRNA:   3'- -UGUCa-UGGgaUGGCUUUUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 102591 0.74 0.559054
Target:  5'- cCAGgucGCCCagcGCCGA--GGGCUGCGCg -3'
miRNA:   3'- uGUCa--UGGGa--UGGCUuuUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 99940 0.74 0.560081
Target:  5'- cGCAGggcGCCCaGCCGcgcgcgcuccuccucGAAGGCCGCGUg -3'
miRNA:   3'- -UGUCa--UGGGaUGGCu--------------UUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 125406 0.74 0.568312
Target:  5'- gGCAGgGCCCgcCCGGucgcguggcaagcGAGuGGCCGCGCa -3'
miRNA:   3'- -UGUCaUGGGauGGCU-------------UUU-CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 22593 0.74 0.568312
Target:  5'- gGCAGgGCCCgcCCGGucgcguggcaagcGAGuGGCCGCGCa -3'
miRNA:   3'- -UGUCaUGGGauGGCU-------------UUU-CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 133720 0.74 0.569343
Target:  5'- aAUAGUGCCUgGCgGGcgcGGGGCCGCGUg -3'
miRNA:   3'- -UGUCAUGGGaUGgCUu--UUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 6871 0.74 0.576573
Target:  5'- cGCGGguaggGCCUUGCCGAGGAGcagugcgucggcgaGCgCGCGCg -3'
miRNA:   3'- -UGUCa----UGGGAUGGCUUUUC--------------CG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 130711 0.74 0.579679
Target:  5'- -gAGUGCgCCgagGCCGAGGGGGCggagGCGCg -3'
miRNA:   3'- ugUCAUG-GGa--UGGCUUUUCCGg---CGCG- -5'
6372 3' -53.9 NC_001847.1 + 120168 0.74 0.579679
Target:  5'- uGCGGUGCCUguugcuCUGGAugguggugcuGGCCGCGCg -3'
miRNA:   3'- -UGUCAUGGGau----GGCUUuu--------CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 40158 0.74 0.579679
Target:  5'- cGCAGcUGCgCCaaaGCCGcgGGGGCUGCGCg -3'
miRNA:   3'- -UGUC-AUG-GGa--UGGCuuUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 115775 0.74 0.590053
Target:  5'- gGCGGcgGCCCUggccACCGuc-GGGCgCGCGCa -3'
miRNA:   3'- -UGUCa-UGGGA----UGGCuuuUCCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 29896 0.74 0.590053
Target:  5'- gGCGGcgGCCCUGCCGGcc--GCCGCGg -3'
miRNA:   3'- -UGUCa-UGGGAUGGCUuuucCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.