miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 16184 0.66 0.947274
Target:  5'- cGCGG-ACCCcgaAUCGGAAcuGGCCcGCGCc -3'
miRNA:   3'- -UGUCaUGGGa--UGGCUUUu-CCGG-CGCG- -5'
6372 3' -53.9 NC_001847.1 + 88538 0.66 0.947274
Target:  5'- ----cGCUCgugcGCCGc-GAGGCCGCGCc -3'
miRNA:   3'- ugucaUGGGa---UGGCuuUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 15079 0.66 0.947274
Target:  5'- cCGGggauCgCCUGCgGcagcGGGGCCGCGCu -3'
miRNA:   3'- uGUCau--G-GGAUGgCuu--UUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 31099 0.66 0.947274
Target:  5'- cGguGUACCUgGCCugc-GGGCgGCGCg -3'
miRNA:   3'- -UguCAUGGGaUGGcuuuUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 38478 0.66 0.947274
Target:  5'- uGCAGgaUAgCCUcgaggacgucGCCGggG-GGCgGCGCg -3'
miRNA:   3'- -UGUC--AUgGGA----------UGGCuuUuCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 58219 0.66 0.947274
Target:  5'- gGCGGaucUGCCC-GCCGGGcggcagcGGCgGCGCg -3'
miRNA:   3'- -UGUC---AUGGGaUGGCUUuu-----CCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 67184 0.66 0.947274
Target:  5'- gGCGGcgaccCCCUGCCGc---GGCUGUGUg -3'
miRNA:   3'- -UGUCau---GGGAUGGCuuuuCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 86642 0.66 0.947274
Target:  5'- gGCGGgccGCgCCgccCCGGAgcGcGCCGCGCu -3'
miRNA:   3'- -UGUCa--UG-GGau-GGCUUuuC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 48203 0.66 0.947274
Target:  5'- cCGGcgGCCaggGCCGAGGAGcGCaGCGCc -3'
miRNA:   3'- uGUCa-UGGga-UGGCUUUUC-CGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 61777 0.66 0.947274
Target:  5'- gACAaUGCCC-GCCGAccccccGccGGCaCGCGCg -3'
miRNA:   3'- -UGUcAUGGGaUGGCU------UuuCCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 41572 0.66 0.947274
Target:  5'- gACAGgcucagGCCCgugcuUugCGucGAGGCCaGCGUg -3'
miRNA:   3'- -UGUCa-----UGGG-----AugGCuuUUCCGG-CGCG- -5'
6372 3' -53.9 NC_001847.1 + 133912 0.66 0.947274
Target:  5'- cGguGUACCUgGCCugc-GGGCgGCGCg -3'
miRNA:   3'- -UguCAUGGGaUGGcuuuUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 21879 0.66 0.947274
Target:  5'- uGCGGcGCgCUGCCGA---GGCCGagccCGCg -3'
miRNA:   3'- -UGUCaUGgGAUGGCUuuuCCGGC----GCG- -5'
6372 3' -53.9 NC_001847.1 + 87918 0.66 0.947274
Target:  5'- gGCGGgGCgUgggGCUGGGcgcGGCCGCGCa -3'
miRNA:   3'- -UGUCaUGgGa--UGGCUUuu-CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 21507 0.66 0.947274
Target:  5'- cCGGgcgcGCCUcGgCGG--GGGCCGCGCg -3'
miRNA:   3'- uGUCa---UGGGaUgGCUuuUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 1148 0.66 0.947274
Target:  5'- gACuGUACU--GCCGAu---GCCGCGCg -3'
miRNA:   3'- -UGuCAUGGgaUGGCUuuucCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 58038 0.66 0.946832
Target:  5'- aGCAGccccGCCgCUACCGcgcgcgggccgccGAuuGGCgCGCGCg -3'
miRNA:   3'- -UGUCa---UGG-GAUGGC-------------UUuuCCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 32995 0.66 0.942741
Target:  5'- gGCAGggcgGCCggagcgGCCGG--GGGgCGCGCg -3'
miRNA:   3'- -UGUCa---UGGga----UGGCUuuUCCgGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 58669 0.66 0.942741
Target:  5'- uGCAGgcGCCgCUGCCGu---GGaaGCGCg -3'
miRNA:   3'- -UGUCa-UGG-GAUGGCuuuuCCggCGCG- -5'
6372 3' -53.9 NC_001847.1 + 5107 0.66 0.942741
Target:  5'- -aGGUugCUagcggcgGCCG-AAGGGCaCGCGCu -3'
miRNA:   3'- ugUCAugGGa------UGGCuUUUCCG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.