Results 21 - 40 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6372 | 3' | -53.9 | NC_001847.1 | + | 130711 | 0.74 | 0.579679 |
Target: 5'- -gAGUGCgCCgagGCCGAGGGGGCggagGCGCg -3' miRNA: 3'- ugUCAUG-GGa--UGGCUUUUCCGg---CGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 6871 | 0.74 | 0.576573 |
Target: 5'- cGCGGguaggGCCUUGCCGAGGAGcagugcgucggcgaGCgCGCGCg -3' miRNA: 3'- -UGUCa----UGGGAUGGCUUUUC--------------CG-GCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 80655 | 0.76 | 0.440392 |
Target: 5'- cGCGGgagACCCggcGCCGggGAgccgaacGGCUGCGCg -3' miRNA: 3'- -UGUCa--UGGGa--UGGCuuUU-------CCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 89903 | 0.78 | 0.370253 |
Target: 5'- cGCGGcGCCCgagguugUGCCGcgcGAGGCCGCGCu -3' miRNA: 3'- -UGUCaUGGG-------AUGGCuu-UUCCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 15765 | 0.73 | 0.652697 |
Target: 5'- cGCGGgcgGCCCgcuuucGCCGGcggcAAGcGCCGCGCg -3' miRNA: 3'- -UGUCa--UGGGa-----UGGCUu---UUC-CGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 132026 | 0.73 | 0.61089 |
Target: 5'- cCGGUGCUCUcgGCCGcggcGGGCCGCGg -3' miRNA: 3'- uGUCAUGGGA--UGGCuuu-UCCGGCGCg -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 30639 | 0.74 | 0.559054 |
Target: 5'- cGCGGcgGCC--GCCGAAGAGGCgGUGCu -3' miRNA: 3'- -UGUCa-UGGgaUGGCUUUUCCGgCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 42652 | 0.79 | 0.33894 |
Target: 5'- --cGUGCCCUuugUCGAAGAGGCCGcCGCc -3' miRNA: 3'- uguCAUGGGAu--GGCUUUUCCGGC-GCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 18502 | 0.73 | 0.61089 |
Target: 5'- --cGUGCCCgcgGCUGccGAGGCCaGCGCu -3' miRNA: 3'- uguCAUGGGa--UGGCuuUUCCGG-CGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 26423 | 0.79 | 0.321394 |
Target: 5'- cGCAGUcGCCCaGCCGcGAgacggggcagcgguAGGCCGCGCg -3' miRNA: 3'- -UGUCA-UGGGaUGGCuUU--------------UCCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 125406 | 0.74 | 0.568312 |
Target: 5'- gGCAGgGCCCgcCCGGucgcguggcaagcGAGuGGCCGCGCa -3' miRNA: 3'- -UGUCaUGGGauGGCU-------------UUU-CCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 25303 | 0.74 | 0.590053 |
Target: 5'- -uGGcGCCCUcGCCGAcGAGGgCGCGCc -3' miRNA: 3'- ugUCaUGGGA-UGGCUuUUCCgGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 55446 | 0.75 | 0.538641 |
Target: 5'- uGCAGcGCCUggcGCCGGcgGGGCgCGCGCc -3' miRNA: 3'- -UGUCaUGGGa--UGGCUuuUCCG-GCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 36184 | 0.76 | 0.479142 |
Target: 5'- gGCGGUGCgCggcgagGCCGcguacGAGGGGCUGCGCg -3' miRNA: 3'- -UGUCAUGgGa-----UGGC-----UUUUCCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 130914 | 0.77 | 0.396517 |
Target: 5'- gGCGGUGCCCUcgggGCCaGGAccGAGGCCG-GCg -3' miRNA: 3'- -UGUCAUGGGA----UGG-CUU--UUCCGGCgCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 55558 | 0.78 | 0.371082 |
Target: 5'- cCGGcGCCCccgcCCGAAGAGGCCGCGa -3' miRNA: 3'- uGUCaUGGGau--GGCUUUUCCGGCGCg -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 133736 | 0.72 | 0.663128 |
Target: 5'- cGCGGUGCCCgUGCC------GCCGCGCg -3' miRNA: 3'- -UGUCAUGGG-AUGGcuuuucCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 124435 | 0.73 | 0.652697 |
Target: 5'- gGCGGcGCUUgGCCGGcgcGGGCCGCGCc -3' miRNA: 3'- -UGUCaUGGGaUGGCUuu-UCCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 131135 | 0.73 | 0.642249 |
Target: 5'- gGCGGgcgccggGCCCggcGCCccgcGGGGCCGCGCg -3' miRNA: 3'- -UGUCa------UGGGa--UGGcuu-UUCCGGCGCG- -5' |
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6372 | 3' | -53.9 | NC_001847.1 | + | 101559 | 0.73 | 0.621337 |
Target: 5'- cGCAG-GCC--GCCGAGcccGGGCCGCGCc -3' miRNA: 3'- -UGUCaUGGgaUGGCUUu--UCCGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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