miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 74328 0.82 0.219746
Target:  5'- gACGGUGCCgCUGCCGc--AGGCgCGCGCg -3'
miRNA:   3'- -UGUCAUGG-GAUGGCuuuUCCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 30639 0.74 0.559054
Target:  5'- cGCGGcgGCC--GCCGAAGAGGCgGUGCu -3'
miRNA:   3'- -UGUCa-UGGgaUGGCUUUUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 6871 0.74 0.576573
Target:  5'- cGCGGguaggGCCUUGCCGAGGAGcagugcgucggcgaGCgCGCGCg -3'
miRNA:   3'- -UGUCa----UGGGAUGGCUUUUC--------------CG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 85475 0.66 0.955612
Target:  5'- aGCAGaacuacgGCCgUguacGCgGAGAAGGCCGCuGUg -3'
miRNA:   3'- -UGUCa------UGGgA----UGgCUUUUCCGGCG-CG- -5'
6372 3' -53.9 NC_001847.1 + 55558 0.78 0.371082
Target:  5'- cCGGcGCCCccgcCCGAAGAGGCCGCGa -3'
miRNA:   3'- uGUCaUGGGau--GGCUUUUCCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 9510 0.78 0.379436
Target:  5'- aGCGG-ACCCgaGCCGAGcGGGCgGCGCg -3'
miRNA:   3'- -UGUCaUGGGa-UGGCUUuUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 130914 0.77 0.396517
Target:  5'- gGCGGUGCCCUcgggGCCaGGAccGAGGCCG-GCg -3'
miRNA:   3'- -UGUCAUGGGA----UGG-CUU--UUCCGGCgCG- -5'
6372 3' -53.9 NC_001847.1 + 122529 0.77 0.432126
Target:  5'- aGCAGUgccgcccggACCCUGCCGGucgcuGGCCGCa- -3'
miRNA:   3'- -UGUCA---------UGGGAUGGCUuuu--CCGGCGcg -5'
6372 3' -53.9 NC_001847.1 + 36184 0.76 0.479142
Target:  5'- gGCGGUGCgCggcgagGCCGcguacGAGGGGCUGCGCg -3'
miRNA:   3'- -UGUCAUGgGa-----UGGC-----UUUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 4439 0.74 0.548818
Target:  5'- cGCAGggaaACgCgcacGCCGuGAAAGGCCGCGCg -3'
miRNA:   3'- -UGUCa---UGgGa---UGGC-UUUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 14998 0.75 0.538641
Target:  5'- gGCaAGcGCCCcucgGCCGcgguGGGGCCGCGCg -3'
miRNA:   3'- -UG-UCaUGGGa---UGGCuu--UUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 80655 0.76 0.440392
Target:  5'- cGCGGgagACCCggcGCCGggGAgccgaacGGCUGCGCg -3'
miRNA:   3'- -UGUCa--UGGGa--UGGCuuUU-------CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 26423 0.79 0.321394
Target:  5'- cGCAGUcGCCCaGCCGcGAgacggggcagcgguAGGCCGCGCg -3'
miRNA:   3'- -UGUCA-UGGGaUGGCuUU--------------UCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 55446 0.75 0.538641
Target:  5'- uGCAGcGCCUggcGCCGGcgGGGCgCGCGCc -3'
miRNA:   3'- -UGUCaUGGGa--UGGCUuuUCCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 42652 0.79 0.33894
Target:  5'- --cGUGCCCUuugUCGAAGAGGCCGcCGCc -3'
miRNA:   3'- uguCAUGGGAu--GGCUUUUCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 18984 0.76 0.439469
Target:  5'- cGCGGcGCCCgcgGCCGccagcgccucGGGCCGCGCg -3'
miRNA:   3'- -UGUCaUGGGa--UGGCuuu-------UCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 38709 0.74 0.548818
Target:  5'- cCAGUGCCU--CCG---GGGCCGCGCc -3'
miRNA:   3'- uGUCAUGGGauGGCuuuUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 125406 0.74 0.568312
Target:  5'- gGCAGgGCCCgcCCGGucgcguggcaagcGAGuGGCCGCGCa -3'
miRNA:   3'- -UGUCaUGGGauGGCU-------------UUU-CCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 89903 0.78 0.370253
Target:  5'- cGCGGcGCCCgagguugUGCCGcgcGAGGCCGCGCu -3'
miRNA:   3'- -UGUCaUGGG-------AUGGCuu-UUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 47128 0.77 0.396517
Target:  5'- uGCAGUACUC-GCCGAuGAcGCCGCGCc -3'
miRNA:   3'- -UGUCAUGGGaUGGCUuUUcCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.