miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 85475 0.66 0.955612
Target:  5'- aGCAGaacuacgGCCgUguacGCgGAGAAGGCCGCuGUg -3'
miRNA:   3'- -UGUCa------UGGgA----UGgCUUUUCCGGCG-CG- -5'
6372 3' -53.9 NC_001847.1 + 60736 0.66 0.951563
Target:  5'- uCGGcgGCCCgcgcGCgCGcGgcGGCCGCGCg -3'
miRNA:   3'- uGUCa-UGGGa---UG-GCuUuuCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 73750 0.66 0.947274
Target:  5'- gGCAGUuCCaagcGCCGGGc-GGCgGCGCg -3'
miRNA:   3'- -UGUCAuGGga--UGGCUUuuCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 68865 0.66 0.947274
Target:  5'- gGCGgcGUGCgCCggGCCGAAGAGGCCu--- -3'
miRNA:   3'- -UGU--CAUG-GGa-UGGCUUUUCCGGcgcg -5'
6372 3' -53.9 NC_001847.1 + 61083 0.66 0.947274
Target:  5'- gGCGcgACgCCguugACCGAGaagGAGGCCaGCGCc -3'
miRNA:   3'- -UGUcaUG-GGa---UGGCUU---UUCCGG-CGCG- -5'
6372 3' -53.9 NC_001847.1 + 49570 0.66 0.947274
Target:  5'- cGCGGaACCUcucgGCCGAc--GGCgGCGCc -3'
miRNA:   3'- -UGUCaUGGGa---UGGCUuuuCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 109327 0.66 0.947274
Target:  5'- gACAGccUGCCCgGCCGAcgcggcggagcaGcucGAGGCCGaGCa -3'
miRNA:   3'- -UGUC--AUGGGaUGGCU------------U---UUCCGGCgCG- -5'
6372 3' -53.9 NC_001847.1 + 88538 0.66 0.947274
Target:  5'- ----cGCUCgugcGCCGc-GAGGCCGCGCc -3'
miRNA:   3'- ugucaUGGGa---UGGCuuUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 86642 0.66 0.947274
Target:  5'- gGCGGgccGCgCCgccCCGGAgcGcGCCGCGCu -3'
miRNA:   3'- -UGUCa--UG-GGau-GGCUUuuC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 33943 0.66 0.951563
Target:  5'- uGCAG-GCCC-GCCGGagaaGAAGGacagaguuagaCCGCGCc -3'
miRNA:   3'- -UGUCaUGGGaUGGCU----UUUCC-----------GGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 40753 0.66 0.951563
Target:  5'- cGCGGUACUgcGCCGAAucguGcGCCGCa- -3'
miRNA:   3'- -UGUCAUGGgaUGGCUUuu--C-CGGCGcg -5'
6372 3' -53.9 NC_001847.1 + 70736 0.66 0.951563
Target:  5'- gACA--GCCgCUGCC-AAuAGcGCCGCGCa -3'
miRNA:   3'- -UGUcaUGG-GAUGGcUUuUC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 131286 0.66 0.955612
Target:  5'- cGCAGc-CCCggcGCCGucuacgucuGGGGCgGCGCg -3'
miRNA:   3'- -UGUCauGGGa--UGGCuu-------UUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 88101 0.66 0.955612
Target:  5'- gGCGGUGgCgCggcugGCCGGAAucacGGuGUCGCGCg -3'
miRNA:   3'- -UGUCAUgG-Ga----UGGCUUU----UC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 31447 0.66 0.955612
Target:  5'- cGCGGcgGCCCcgGCgCGGGccGccGCCGCGCg -3'
miRNA:   3'- -UGUCa-UGGGa-UG-GCUUuuC--CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 13538 0.66 0.955612
Target:  5'- gGCAGcaaCC-GCCGccGGGGCgGCGCg -3'
miRNA:   3'- -UGUCaugGGaUGGCuuUUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 128440 0.66 0.954822
Target:  5'- uACAGUgcgcucgGCCCUGCgCGcgcgcccGGccGGCCGcCGCg -3'
miRNA:   3'- -UGUCA-------UGGGAUG-GC-------UUuuCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 108636 0.66 0.951563
Target:  5'- gGCGGgcgACgCUGCaGAAGuggccgGGGCCGCGg -3'
miRNA:   3'- -UGUCa--UGgGAUGgCUUU------UCCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 83945 0.66 0.951563
Target:  5'- cCAGcACCgagcGCCGAaacagGAAGGCCGuCGCc -3'
miRNA:   3'- uGUCaUGGga--UGGCU-----UUUCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 87925 0.66 0.951563
Target:  5'- ----aACgCCgugGCCGAGGAGGCCcUGCg -3'
miRNA:   3'- ugucaUG-GGa--UGGCUUUUCCGGcGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.