miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 3' -53.9 NC_001847.1 + 139 0.68 0.876579
Target:  5'- cGCGGgccucggGCCCcgGCCGggG-GGCCGgGg -3'
miRNA:   3'- -UGUCa------UGGGa-UGGCuuUuCCGGCgCg -5'
6372 3' -53.9 NC_001847.1 + 881 0.71 0.714704
Target:  5'- gGCGGcgGCCCgcGCCGggGccGCCGCGg -3'
miRNA:   3'- -UGUCa-UGGGa-UGGCuuUucCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 1148 0.66 0.947274
Target:  5'- gACuGUACU--GCCGAu---GCCGCGCg -3'
miRNA:   3'- -UGuCAUGGgaUGGCUuuucCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 1544 0.69 0.853559
Target:  5'- -aGGcGCCCggGCCGAAGAcGcGCCGCGa -3'
miRNA:   3'- ugUCaUGGGa-UGGCUUUU-C-CGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 1651 0.71 0.764439
Target:  5'- uACAcGUGCgCCUGcCCGAcggccGGGCCGuCGCg -3'
miRNA:   3'- -UGU-CAUG-GGAU-GGCUuu---UCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 2132 0.66 0.955612
Target:  5'- cCAGUGCgUCUACCaGGuuuGcGCUGCGCa -3'
miRNA:   3'- uGUCAUG-GGAUGG-CUuuuC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 2173 0.71 0.764439
Target:  5'- cGCAGcGCCCgcGCCGccuGGGCgGCGUg -3'
miRNA:   3'- -UGUCaUGGGa-UGGCuuuUCCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 2336 0.66 0.955612
Target:  5'- cGCGGaACCC-GCCGuuuugcacGGGCCGCa- -3'
miRNA:   3'- -UGUCaUGGGaUGGCuuu-----UCCGGCGcg -5'
6372 3' -53.9 NC_001847.1 + 2343 0.66 0.937963
Target:  5'- gGCGGcuCCCgccgcGCCGGcccGGCCGCGUc -3'
miRNA:   3'- -UGUCauGGGa----UGGCUuuuCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 2424 0.66 0.937963
Target:  5'- -gAGggGCCCcccgcggcgGCCGgcAGGGCCGcCGCc -3'
miRNA:   3'- ugUCa-UGGGa--------UGGCuuUUCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 2775 0.66 0.942741
Target:  5'- cCGGcGCCCccGCCGGcggccuccAGGGCCGCGa -3'
miRNA:   3'- uGUCaUGGGa-UGGCUu-------UUCCGGCGCg -5'
6372 3' -53.9 NC_001847.1 + 2863 0.72 0.694227
Target:  5'- cCAGcGCCCagGCCGAcgcgcGGGCCGcCGCg -3'
miRNA:   3'- uGUCaUGGGa-UGGCUuu---UCCGGC-GCG- -5'
6372 3' -53.9 NC_001847.1 + 2976 0.68 0.869126
Target:  5'- cGCAGcGCC--GCCGggGccggcgcuGGaGCCGCGCg -3'
miRNA:   3'- -UGUCaUGGgaUGGCuuU--------UC-CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 3107 0.7 0.774057
Target:  5'- gGCAGgccgcgGCCCgccgcgGCCGAGAGcaccgggagcccGGCgGCGCc -3'
miRNA:   3'- -UGUCa-----UGGGa-----UGGCUUUU------------CCGgCGCG- -5'
6372 3' -53.9 NC_001847.1 + 3777 0.68 0.897552
Target:  5'- cGCGGgugucGCCCgcgccGCCGAAGcgcacgcGGCCGgGCg -3'
miRNA:   3'- -UGUCa----UGGGa----UGGCUUUu------CCGGCgCG- -5'
6372 3' -53.9 NC_001847.1 + 4011 0.69 0.845458
Target:  5'- aACAGUccGCCCc-CCGAGcAGcauaccgcGCCGCGCg -3'
miRNA:   3'- -UGUCA--UGGGauGGCUUuUC--------CGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 4170 0.69 0.823469
Target:  5'- aGCGG-GCCUUGuuuugggccgcgcgcCCGu--GGGCCGCGCg -3'
miRNA:   3'- -UGUCaUGGGAU---------------GGCuuuUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 4212 0.69 0.845458
Target:  5'- gGCAGccaaaGCCCUGCgCGGugccGGCgCGCGCc -3'
miRNA:   3'- -UGUCa----UGGGAUG-GCUuuu-CCG-GCGCG- -5'
6372 3' -53.9 NC_001847.1 + 4439 0.74 0.548818
Target:  5'- cGCAGggaaACgCgcacGCCGuGAAAGGCCGCGCg -3'
miRNA:   3'- -UGUCa---UGgGa---UGGC-UUUUCCGGCGCG- -5'
6372 3' -53.9 NC_001847.1 + 5107 0.66 0.942741
Target:  5'- -aGGUugCUagcggcgGCCG-AAGGGCaCGCGCu -3'
miRNA:   3'- ugUCAugGGa------UGGCuUUUCCG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.