miRNA display CGI


Results 41 - 60 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 121650 0.66 0.681904
Target:  5'- gGCGCGCacuucgcggaagGCCGC-CGCUGuGGgGUgCGGc -3'
miRNA:   3'- -CGCGCGg-----------UGGCGaGCGAC-CCgUA-GCC- -5'
6372 5' -61.3 NC_001847.1 + 28496 0.66 0.677989
Target:  5'- cGCgGCGCCGCCGCUagCGCgcgcgcuuuuugccgUGGcGCuuGUCGa -3'
miRNA:   3'- -CG-CGCGGUGGCGA--GCG---------------ACC-CG--UAGCc -5'
6372 5' -61.3 NC_001847.1 + 73253 0.66 0.677989
Target:  5'- uCGCGUacuuCCGCUCGCcgugcaacccccgcGGGCGcUCGGc -3'
miRNA:   3'- cGCGCGgu--GGCGAGCGa-------------CCCGU-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 55760 0.66 0.675049
Target:  5'- cCGCGCgGCCgugcccugaguacggGCUcgggcggaacuacaCGgaGGGCAUCGGc -3'
miRNA:   3'- cGCGCGgUGG---------------CGA--------------GCgaCCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 4950 0.66 0.674068
Target:  5'- cCGCGCCGcCCGuCUCuucagGCcGGGCGcccgCGGg -3'
miRNA:   3'- cGCGCGGU-GGC-GAG-----CGaCCCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 113061 0.66 0.674068
Target:  5'- aGCGCGUCGgCGCaCGuCUGcGCaAUCGGa -3'
miRNA:   3'- -CGCGCGGUgGCGaGC-GACcCG-UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 36435 0.66 0.674068
Target:  5'- cGCGCGCCGuaGCggCGCgcgcGGCG-CGGc -3'
miRNA:   3'- -CGCGCGGUggCGa-GCGac--CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 56733 0.66 0.674068
Target:  5'- cGCGCGCCAgcagcgcgcCCGCa-GCggcgGGGUccUCGGc -3'
miRNA:   3'- -CGCGCGGU---------GGCGagCGa---CCCGu-AGCC- -5'
6372 5' -61.3 NC_001847.1 + 132071 0.66 0.674068
Target:  5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3'
miRNA:   3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 2655 0.66 0.674068
Target:  5'- uGCgGCGCCuucgcccgGCgGCUCGgccGGCAUCGGc -3'
miRNA:   3'- -CG-CGCGG--------UGgCGAGCgacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 13091 0.66 0.674068
Target:  5'- aGUGCGCaACUGCcauuuuuugUCGCggccgGGGCGcgCGGg -3'
miRNA:   3'- -CGCGCGgUGGCG---------AGCGa----CCCGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 48494 0.66 0.674068
Target:  5'- -aGCGCgGCgCGCUC-CgGGGCGgcgCGGc -3'
miRNA:   3'- cgCGCGgUG-GCGAGcGaCCCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 42729 0.66 0.674068
Target:  5'- gGCGgGCgGCCGC--GC-GGGCggCGGg -3'
miRNA:   3'- -CGCgCGgUGGCGagCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 29258 0.66 0.674068
Target:  5'- uGCGCGCCggACgCGCUgGC-GGcGCAccCGGa -3'
miRNA:   3'- -CGCGCGG--UG-GCGAgCGaCC-CGUa-GCC- -5'
6372 5' -61.3 NC_001847.1 + 116427 0.66 0.674068
Target:  5'- cGCGCGCUuggGCUCGa-GGGCggUGGg -3'
miRNA:   3'- -CGCGCGGuggCGAGCgaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 50341 0.66 0.673087
Target:  5'- cCGgGCUGCCGCUaggguaaagcuggCGCUGgccGGCGUCGc -3'
miRNA:   3'- cGCgCGGUGGCGA-------------GCGAC---CCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 11243 0.66 0.668177
Target:  5'- aGC-CGCCguuuucgggaagcuuGCCGCgggCGCUGGGCuUCc- -3'
miRNA:   3'- -CGcGCGG---------------UGGCGa--GCGACCCGuAGcc -5'
6372 5' -61.3 NC_001847.1 + 6358 0.66 0.664245
Target:  5'- cCGCGCCGCgggcguaGC-CGCUGcGGCAgcagaaggCGGc -3'
miRNA:   3'- cGCGCGGUGg------CGaGCGAC-CCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 132712 0.66 0.664245
Target:  5'- gGCGgcccUGCCgGCCGC-CGCggGGGCcccUCGGg -3'
miRNA:   3'- -CGC----GCGG-UGGCGaGCGa-CCCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 96184 0.66 0.664245
Target:  5'- cGCGgcCGCCGCCauggcGCUCGCggcccccGGGCc-CGGg -3'
miRNA:   3'- -CGC--GCGGUGG-----CGAGCGa------CCCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.