miRNA display CGI


Results 21 - 40 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 3007 0.74 0.259828
Target:  5'- cGCGCGCucCACCGCgUCGC-GGGCcgCGc -3'
miRNA:   3'- -CGCGCG--GUGGCG-AGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 3069 0.69 0.508504
Target:  5'- gGUGCGCCGCCaGCgcguccggCGCgcaGGCcgCGGc -3'
miRNA:   3'- -CGCGCGGUGG-CGa-------GCGac-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 3231 0.77 0.16938
Target:  5'- cGCGCGCCGCCcgcgccguGCUCGCcggcggcagGGGCGcCGGc -3'
miRNA:   3'- -CGCGCGGUGG--------CGAGCGa--------CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 3320 0.68 0.556178
Target:  5'- cGgGCGCCGCUGC-CGCc-GGCGcCGGc -3'
miRNA:   3'- -CgCGCGGUGGCGaGCGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 3732 0.73 0.284646
Target:  5'- aGCGCGCgGCCGcCUCGCggaucucgGGGCAg--- -3'
miRNA:   3'- -CGCGCGgUGGC-GAGCGa-------CCCGUagcc -5'
6372 5' -61.3 NC_001847.1 + 3789 0.7 0.427563
Target:  5'- cCGCGCCGCCGaagCGCacgcggccGGGCggCGGc -3'
miRNA:   3'- cGCGCGGUGGCga-GCGa-------CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 3824 0.67 0.605059
Target:  5'- gGCGCGCUGCCGggccacgcCUCGCcagaaGGCGUCa- -3'
miRNA:   3'- -CGCGCGGUGGC--------GAGCGac---CCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 3891 0.71 0.3624
Target:  5'- cGCGCGgCGCCGCggcguagccagCGC-GGGCGcCGGu -3'
miRNA:   3'- -CGCGCgGUGGCGa----------GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 3928 0.66 0.683859
Target:  5'- uGCGCGCC-CgCGCUgGCgccGcGGCGggGGg -3'
miRNA:   3'- -CGCGCGGuG-GCGAgCGa--C-CCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 3994 0.71 0.37016
Target:  5'- gGCGCGCgGCC-C-CGCgGGGCGcCGGg -3'
miRNA:   3'- -CGCGCGgUGGcGaGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 4023 0.7 0.444908
Target:  5'- gGCGC-CCGCCuCUCGCgGGGCcgcuUUGGu -3'
miRNA:   3'- -CGCGcGGUGGcGAGCGaCCCGu---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 4170 0.66 0.693611
Target:  5'- aGCGgGCCuuguuuuggGCCGCgCGCccgUGGGCcgCGc -3'
miRNA:   3'- -CGCgCGG---------UGGCGaGCG---ACCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 4314 0.7 0.410626
Target:  5'- cGCGCGCCGCCuGCggguagUGCUccgccauguaGGGCGccagcUCGGc -3'
miRNA:   3'- -CGCGCGGUGG-CGa-----GCGA----------CCCGU-----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 4391 0.69 0.46264
Target:  5'- cGCGCGCCGCgGCccaggCGCUGuccGCGUCc- -3'
miRNA:   3'- -CGCGCGGUGgCGa----GCGACc--CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 4649 0.67 0.605059
Target:  5'- cGCGCGCCucagcccgacgcGCCGCgucgaGCaGGGC--CGGg -3'
miRNA:   3'- -CGCGCGG------------UGGCGag---CGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 4950 0.66 0.674068
Target:  5'- cCGCGCCGcCCGuCUCuucagGCcGGGCGcccgCGGg -3'
miRNA:   3'- cGCGCGGU-GGC-GAG-----CGaCCCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 5458 0.74 0.27201
Target:  5'- aGCGCGUCccgGCCGCUCuCUGcGGCggCGGc -3'
miRNA:   3'- -CGCGCGG---UGGCGAGcGAC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 5668 0.68 0.575624
Target:  5'- uGCGCGCCGUCGCgCGC--GGCggCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 5764 0.66 0.644534
Target:  5'- gGCGCGCCAaCGCgaagCGC--GGCGUCu- -3'
miRNA:   3'- -CGCGCGGUgGCGa---GCGacCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 5903 0.68 0.556178
Target:  5'- cGCGCGUUggucuggcaGCCGCUagGCggaUGGGCggCGGa -3'
miRNA:   3'- -CGCGCGG---------UGGCGAg-CG---ACCCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.