miRNA display CGI


Results 1 - 20 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 47 0.66 0.644534
Target:  5'- cGCGCGgCGCgUGCaUUGCggcGGGCGggggCGGg -3'
miRNA:   3'- -CGCGCgGUG-GCG-AGCGa--CCCGUa---GCC- -5'
6372 5' -61.3 NC_001847.1 + 122 0.7 0.410626
Target:  5'- cGCGCcccgGCC-CCGCcCGC-GGGCcUCGGg -3'
miRNA:   3'- -CGCG----CGGuGGCGaGCGaCCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 380 0.68 0.54364
Target:  5'- cGCGCGCCGCgCGCcggaccgCGCUccgaccgagaccgaGGGCccggggCGGg -3'
miRNA:   3'- -CGCGCGGUG-GCGa------GCGA--------------CCCGua----GCC- -5'
6372 5' -61.3 NC_001847.1 + 910 0.66 0.683859
Target:  5'- cCGCcgGCCGCCGCcCGCc-GGCGcCGGg -3'
miRNA:   3'- cGCG--CGGUGGCGaGCGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 953 0.77 0.161283
Target:  5'- cGCGCGCCGCuccaCGCUgCGCcGGGCGUCu- -3'
miRNA:   3'- -CGCGCGGUG----GCGA-GCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 1094 0.68 0.556178
Target:  5'- cGgGCGCCGCgGC-CGC-GGGCGgcgccgccgCGGc -3'
miRNA:   3'- -CgCGCGGUGgCGaGCGaCCCGUa--------GCC- -5'
6372 5' -61.3 NC_001847.1 + 1176 0.71 0.402314
Target:  5'- cGCGCagaagGCCACCGC-CGCggccGGCAgcucgUCGGg -3'
miRNA:   3'- -CGCG-----CGGUGGCGaGCGac--CCGU-----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 1393 0.7 0.436186
Target:  5'- aCGCGCUGCCGguaCUCGCgcgGcGGCA-CGGg -3'
miRNA:   3'- cGCGCGGUGGC---GAGCGa--C-CCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 1583 0.74 0.27201
Target:  5'- cGCGCGCCAgCGCgcCGCUcGGGCcagcgcgCGGc -3'
miRNA:   3'- -CGCGCGGUgGCGa-GCGA-CCCGua-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 1909 0.67 0.605059
Target:  5'- aGCGCGugcgagagcCCGCCGCggCGCgGcGGCcacUCGGg -3'
miRNA:   3'- -CGCGC---------GGUGGCGa-GCGaC-CCGu--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 2061 0.68 0.56588
Target:  5'- aCGCGCCGCCGCa-GCgGuGGCggCGa -3'
miRNA:   3'- cGCGCGGUGGCGagCGaC-CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 2173 0.68 0.546526
Target:  5'- cGCaGCGCC-CgCGC-CGcCUGGGCGgcgugCGGg -3'
miRNA:   3'- -CG-CGCGGuG-GCGaGC-GACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 2222 0.76 0.182207
Target:  5'- gGC-CGCCagcGCCGCggCGCUGGGCG-CGGg -3'
miRNA:   3'- -CGcGCGG---UGGCGa-GCGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 2401 0.67 0.634661
Target:  5'- aCGCGCUcgGCCgugGCUCGCUGcGCcgcuUCGGc -3'
miRNA:   3'- cGCGCGG--UGG---CGAGCGACcCGu---AGCC- -5'
6372 5' -61.3 NC_001847.1 + 2540 0.66 0.664245
Target:  5'- cGCGgGaCCGCUGCUCuccgGC-GGGCugucuUCGGc -3'
miRNA:   3'- -CGCgC-GGUGGCGAG----CGaCCCGu----AGCC- -5'
6372 5' -61.3 NC_001847.1 + 2541 0.66 0.693611
Target:  5'- gGCgGCGCUcCCGC-CGCcGGGC--CGGg -3'
miRNA:   3'- -CG-CGCGGuGGCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 2655 0.66 0.674068
Target:  5'- uGCgGCGCCuucgcccgGCgGCUCGgccGGCAUCGGc -3'
miRNA:   3'- -CG-CGCGG--------UGgCGAGCgacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 2852 0.69 0.46264
Target:  5'- cCGCcauGCCGCUGCgacUCGC-GGGCGUCGu -3'
miRNA:   3'- cGCG---CGGUGGCG---AGCGaCCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 2881 0.67 0.614916
Target:  5'- cGCGgGCCGCCGCgcCGC---GCGUCGa -3'
miRNA:   3'- -CGCgCGGUGGCGa-GCGaccCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 2893 0.67 0.614916
Target:  5'- gGUGCGUCGCCGUUC---GGGCcggacgGUCGGu -3'
miRNA:   3'- -CGCGCGGUGGCGAGcgaCCCG------UAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.