miRNA display CGI


Results 1 - 20 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 110825 1.1 0.000756
Target:  5'- gGCGCGCCACCGCUCGCUGGGCAUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGAGCGACCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 53708 0.86 0.040434
Target:  5'- aGCGCGCCGCCggcgGCUCGCgGGGCGgaUCGGc -3'
miRNA:   3'- -CGCGCGGUGG----CGAGCGaCCCGU--AGCC- -5'
6372 5' -61.3 NC_001847.1 + 50007 0.84 0.053943
Target:  5'- cGCGCGcCCACCGCcUGCUGGGCccCGGg -3'
miRNA:   3'- -CGCGC-GGUGGCGaGCGACCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 98148 0.84 0.058333
Target:  5'- aGCGCGCCGCCGC-CGCUcGGCG-CGGg -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGAcCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 68930 0.83 0.063067
Target:  5'- cGCGCGCCcgaGCCGC-CGCUGGGCGgcgccgaugCGGa -3'
miRNA:   3'- -CGCGCGG---UGGCGaGCGACCCGUa--------GCC- -5'
6372 5' -61.3 NC_001847.1 + 122341 0.82 0.071793
Target:  5'- cGCGCGCCACgCGCugaUCGUUGGGCGgcgugCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCG---AGCGACCCGUa----GCC- -5'
6372 5' -61.3 NC_001847.1 + 18810 0.81 0.0905
Target:  5'- cGCGCGCCAgCGCgCGCaUGGGCA-CGGc -3'
miRNA:   3'- -CGCGCGGUgGCGaGCG-ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 33519 0.8 0.100227
Target:  5'- cGgGCGCCGCCGCggaggCGCcGGGCG-CGGg -3'
miRNA:   3'- -CgCGCGGUGGCGa----GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 100545 0.8 0.100227
Target:  5'- gGCGCGCCGCCGCgccagCGCccGGGCcuugcgcagGUCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGa----GCGa-CCCG---------UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 84162 0.79 0.129017
Target:  5'- cGCGCGCUcgagcugcGCCGC-CGaCUGGGCGUCGu -3'
miRNA:   3'- -CGCGCGG--------UGGCGaGC-GACCCGUAGCc -5'
6372 5' -61.3 NC_001847.1 + 52492 0.78 0.132285
Target:  5'- gGCGCGCCG-CGCUCGC-GGGU-UCGGg -3'
miRNA:   3'- -CGCGCGGUgGCGAGCGaCCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 76912 0.78 0.135628
Target:  5'- cGCGCGCCGCCGCUgcCGCccggcGGGCAgauccgccCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGA--GCGa----CCCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 10194 0.78 0.139049
Target:  5'- uGCGCGCCGCCGCcgcCGCcGGGCccaGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGaCCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 113007 0.78 0.139049
Target:  5'- uGCGCGCCGCCGCcgcCGCcGGGCccaGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGaCCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 19644 0.78 0.146129
Target:  5'- gGCGCGCgGCCGCUUGC-GGGCc-CGGc -3'
miRNA:   3'- -CGCGCGgUGGCGAGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 73211 0.77 0.157367
Target:  5'- cCGCGCCGCCGCUgaCGCggaggagggGGGCggCGGc -3'
miRNA:   3'- cGCGCGGUGGCGA--GCGa--------CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 75395 0.77 0.157367
Target:  5'- uCGCGUCGCCGC-CGCgaggcGGGCAUCGcGg -3'
miRNA:   3'- cGCGCGGUGGCGaGCGa----CCCGUAGC-C- -5'
6372 5' -61.3 NC_001847.1 + 12327 0.77 0.157367
Target:  5'- gGCGCGcCCGCCgGCUCGCUGGugaGCggUGGg -3'
miRNA:   3'- -CGCGC-GGUGG-CGAGCGACC---CGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 953 0.77 0.161283
Target:  5'- cGCGCGCCGCuccaCGCUgCGCcGGGCGUCu- -3'
miRNA:   3'- -CGCGCGGUG----GCGA-GCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 14648 0.77 0.16938
Target:  5'- cGCGCGCCGCuCGCUgcgaGCgGGGCgcguGUCGGc -3'
miRNA:   3'- -CGCGCGGUG-GCGAg---CGaCCCG----UAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.