miRNA display CGI


Results 1 - 20 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 83837 0.66 0.683859
Target:  5'- -aGCGCCGCCGCa-GCacGGGC--UGGa -3'
miRNA:   3'- cgCGCGGUGGCGagCGa-CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 122379 0.66 0.683859
Target:  5'- aGCGCGUccagcgacauCugCGCgaagaaggCGCUGGGCcgCa- -3'
miRNA:   3'- -CGCGCG----------GugGCGa-------GCGACCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 91357 0.66 0.683859
Target:  5'- gGCGCGCCGgCGCgCGCguccaGCAcCGGc -3'
miRNA:   3'- -CGCGCGGUgGCGaGCGacc--CGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 71992 0.66 0.683859
Target:  5'- uGCGCGCCugCGC--GCcGGGaucCGGu -3'
miRNA:   3'- -CGCGCGGugGCGagCGaCCCguaGCC- -5'
6372 5' -61.3 NC_001847.1 + 45769 0.66 0.683859
Target:  5'- uGCGCGUcuaaguCAUCGCgcacggCGCc-GGCGUCGGc -3'
miRNA:   3'- -CGCGCG------GUGGCGa-----GCGacCCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 16897 0.66 0.683859
Target:  5'- cGCuGCGUCGCCGguCUCGCgcGGGCG--GGa -3'
miRNA:   3'- -CG-CGCGGUGGC--GAGCGa-CCCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 3928 0.66 0.683859
Target:  5'- uGCGCGCC-CgCGCUgGCgccGcGGCGggGGg -3'
miRNA:   3'- -CGCGCGGuG-GCGAgCGa--C-CCGUagCC- -5'
6372 5' -61.3 NC_001847.1 + 910 0.66 0.683859
Target:  5'- cCGCcgGCCGCCGCcCGCc-GGCGcCGGg -3'
miRNA:   3'- cGCG--CGGUGGCGaGCGacCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 97585 0.66 0.683859
Target:  5'- -aGCGCCGCCGCgucuucCGaaGGGCcgcccGUCGc -3'
miRNA:   3'- cgCGCGGUGGCGa-----GCgaCCCG-----UAGCc -5'
6372 5' -61.3 NC_001847.1 + 124988 0.66 0.683859
Target:  5'- cGCGCGUCGaaaaagcccucCCGCUCGCgcuacGGC--CGGg -3'
miRNA:   3'- -CGCGCGGU-----------GGCGAGCGac---CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 57608 0.66 0.692637
Target:  5'- gGUGCGCCACgcccucgCGCUCGCa-GGCAcgCGc -3'
miRNA:   3'- -CGCGCGGUG-------GCGAGCGacCCGUa-GCc -5'
6372 5' -61.3 NC_001847.1 + 78387 0.66 0.692637
Target:  5'- aGCGCGCCAgCuccugcagguacaGCUuggccagcucguUGCUGaGCAUCGGc -3'
miRNA:   3'- -CGCGCGGUgG-------------CGA------------GCGACcCGUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 123691 0.66 0.693611
Target:  5'- aCGCGCacgguaGCCGCUgGCgcgGGGUcgCa- -3'
miRNA:   3'- cGCGCGg-----UGGCGAgCGa--CCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 123061 0.66 0.693611
Target:  5'- cGgGCGCCGgacCCGCggCGCUccGcGGCcUCGGc -3'
miRNA:   3'- -CgCGCGGU---GGCGa-GCGA--C-CCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 100839 0.66 0.693611
Target:  5'- aGCGCGcCCGaaGcCUCGCUGacGGCcgCGa -3'
miRNA:   3'- -CGCGC-GGUggC-GAGCGAC--CCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 60391 0.66 0.693611
Target:  5'- cGCGCGCCgACCGCgucucccaGCcGGGUcgCc- -3'
miRNA:   3'- -CGCGCGG-UGGCGag------CGaCCCGuaGcc -5'
6372 5' -61.3 NC_001847.1 + 59745 0.66 0.693611
Target:  5'- gGCGCGa-GCuCGaCUCGCUGGccGCGUCcGGu -3'
miRNA:   3'- -CGCGCggUG-GC-GAGCGACC--CGUAG-CC- -5'
6372 5' -61.3 NC_001847.1 + 16781 0.66 0.693611
Target:  5'- cCGCGCCGCaCG---GCgGGGuCAUCGGg -3'
miRNA:   3'- cGCGCGGUG-GCgagCGaCCC-GUAGCC- -5'
6372 5' -61.3 NC_001847.1 + 2541 0.66 0.693611
Target:  5'- gGCgGCGCUcCCGC-CGCcGGGC--CGGg -3'
miRNA:   3'- -CG-CGCGGuGGCGaGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 120103 0.66 0.693611
Target:  5'- -gGCGCuCGCacaGCUCGCccgGcGGCcgCGGc -3'
miRNA:   3'- cgCGCG-GUGg--CGAGCGa--C-CCGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.