miRNA display CGI


Results 1 - 20 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 68930 0.83 0.063067
Target:  5'- cGCGCGCCcgaGCCGC-CGCUGGGCGgcgccgaugCGGa -3'
miRNA:   3'- -CGCGCGG---UGGCGaGCGACCCGUa--------GCC- -5'
6372 5' -61.3 NC_001847.1 + 101369 0.75 0.236805
Target:  5'- cGCGCGCUugCGC-CGCggGGGCugcccgCGGc -3'
miRNA:   3'- -CGCGCGGugGCGaGCGa-CCCGua----GCC- -5'
6372 5' -61.3 NC_001847.1 + 105820 0.74 0.259828
Target:  5'- cGCGCGCucCACCGCgUCGC-GGGCcgCGc -3'
miRNA:   3'- -CGCGCG--GUGGCG-AGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 34913 0.68 0.536927
Target:  5'- aCGCGaagaucgauguCCGCCGC-CGCUGGcGCAgcugcgCGGc -3'
miRNA:   3'- cGCGC-----------GGUGGCGaGCGACC-CGUa-----GCC- -5'
6372 5' -61.3 NC_001847.1 + 113007 0.78 0.139049
Target:  5'- uGCGCGCCGCCGCcgcCGCcGGGCccaGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGaCCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 19644 0.78 0.146129
Target:  5'- gGCGCGCgGCCGCUUGC-GGGCc-CGGc -3'
miRNA:   3'- -CGCGCGgUGGCGAGCGaCCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 106044 0.77 0.16938
Target:  5'- cGCGCGCCGCCcgcgccguGCUCGCcggcggcagGGGCGcCGGc -3'
miRNA:   3'- -CGCGCGGUGG--------CGAGCGa--------CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 43497 0.77 0.16938
Target:  5'- cCGCGCCGCCGUcgaUCGCuacUGGGCGgcgcgcgCGGg -3'
miRNA:   3'- cGCGCGGUGGCG---AGCG---ACCCGUa------GCC- -5'
6372 5' -61.3 NC_001847.1 + 134018 0.76 0.186671
Target:  5'- -gGCGCCGCCGCUggUGCUGgaGGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA--GCGAC--CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 53022 0.75 0.236805
Target:  5'- gGCG-GCCGCUGCgCGCUcGGGCcUCGGc -3'
miRNA:   3'- -CGCgCGGUGGCGaGCGA-CCCGuAGCC- -5'
6372 5' -61.3 NC_001847.1 + 53868 0.76 0.205498
Target:  5'- gGCgGCGCCgACCGC-CGCggGGGCggCGGg -3'
miRNA:   3'- -CG-CGCGG-UGGCGaGCGa-CCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 105035 0.76 0.182207
Target:  5'- gGC-CGCCagcGCCGCggCGCUGGGCG-CGGg -3'
miRNA:   3'- -CGcGCGG---UGGCGa-GCGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 18810 0.81 0.0905
Target:  5'- cGCGCGCCAgCGCgCGCaUGGGCA-CGGc -3'
miRNA:   3'- -CGCGCGGUgGCGaGCG-ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 131337 0.75 0.215515
Target:  5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 33519 0.8 0.100227
Target:  5'- cGgGCGCCGCCGCggaggCGCcGGGCG-CGGg -3'
miRNA:   3'- -CgCGCGGUGGCGa----GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 59831 0.76 0.177839
Target:  5'- uUGCGCCAgCGcCUCGCgGGGCAcCGGc -3'
miRNA:   3'- cGCGCGGUgGC-GAGCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 81166 0.75 0.225947
Target:  5'- gGCcCGCCgcGCCGCUCGgaGGGCucgCGGc -3'
miRNA:   3'- -CGcGCGG--UGGCGAGCgaCCCGua-GCC- -5'
6372 5' -61.3 NC_001847.1 + 82669 0.74 0.259828
Target:  5'- gGCGCGCCG-CGCUCguGCUGuGGUcaugaGUCGGg -3'
miRNA:   3'- -CGCGCGGUgGCGAG--CGAC-CCG-----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 76912 0.78 0.135628
Target:  5'- cGCGCGCCGCCGCUgcCGCccggcGGGCAgauccgccCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGA--GCGa----CCCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 953 0.77 0.161283
Target:  5'- cGCGCGCCGCuccaCGCUgCGCcGGGCGUCu- -3'
miRNA:   3'- -CGCGCGGUG----GCGA-GCGaCCCGUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.