miRNA display CGI


Results 21 - 40 of 652 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6372 5' -61.3 NC_001847.1 + 5458 0.74 0.27201
Target:  5'- aGCGCGUCccgGCCGCUCuCUGcGGCggCGGc -3'
miRNA:   3'- -CGCGCGG---UGGCGAGcGAC-CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 105820 0.74 0.259828
Target:  5'- cGCGCGCucCACCGCgUCGC-GGGCcgCGc -3'
miRNA:   3'- -CGCGCG--GUGGCG-AGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 105035 0.76 0.182207
Target:  5'- gGC-CGCCagcGCCGCggCGCUGGGCG-CGGg -3'
miRNA:   3'- -CGcGCGG---UGGCGa-GCGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 76912 0.78 0.135628
Target:  5'- cGCGCGCCGCCGCUgcCGCccggcGGGCAgauccgccCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGA--GCGa----CCCGUa-------GCC- -5'
6372 5' -61.3 NC_001847.1 + 134539 0.73 0.291136
Target:  5'- cGCGCGCCGCUGCggaGC--GGCcgCGGa -3'
miRNA:   3'- -CGCGCGGUGGCGag-CGacCCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 46117 0.73 0.278271
Target:  5'- aGCGCGCaCACgGCgUCGUaGGGCAUCc- -3'
miRNA:   3'- -CGCGCG-GUGgCG-AGCGaCCCGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 101369 0.75 0.236805
Target:  5'- cGCGCGCUugCGC-CGCggGGGCugcccgCGGc -3'
miRNA:   3'- -CGCGCGGugGCGaGCGa-CCCGua----GCC- -5'
6372 5' -61.3 NC_001847.1 + 33519 0.8 0.100227
Target:  5'- cGgGCGCCGCCGCggaggCGCcGGGCG-CGGg -3'
miRNA:   3'- -CgCGCGGUGGCGa----GCGaCCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 20038 0.73 0.278271
Target:  5'- uGCG-GCCGCCGC-C-CUGGGCG-CGGg -3'
miRNA:   3'- -CGCgCGGUGGCGaGcGACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 18810 0.81 0.0905
Target:  5'- cGCGCGCCAgCGCgCGCaUGGGCA-CGGc -3'
miRNA:   3'- -CGCGCGGUgGCGaGCG-ACCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 82669 0.74 0.259828
Target:  5'- gGCGCGCCG-CGCUCguGCUGuGGUcaugaGUCGGg -3'
miRNA:   3'- -CGCGCGGUgGCGAG--CGAC-CCG-----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 80462 0.74 0.27201
Target:  5'- gGCGcCGCCGCCGC-CGUcGGGCcgCGc -3'
miRNA:   3'- -CGC-GCGGUGGCGaGCGaCCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 131337 0.75 0.215515
Target:  5'- aGCGCGCCGCCGC-CGCccGGCcgCGu -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGacCCGuaGCc -5'
6372 5' -61.3 NC_001847.1 + 134018 0.76 0.186671
Target:  5'- -gGCGCCGCCGCUggUGCUGgaGGCcgCGGc -3'
miRNA:   3'- cgCGCGGUGGCGA--GCGAC--CCGuaGCC- -5'
6372 5' -61.3 NC_001847.1 + 106044 0.77 0.16938
Target:  5'- cGCGCGCCGCCcgcgccguGCUCGCcggcggcagGGGCGcCGGc -3'
miRNA:   3'- -CGCGCGGUGG--------CGAGCGa--------CCCGUaGCC- -5'
6372 5' -61.3 NC_001847.1 + 113007 0.78 0.139049
Target:  5'- uGCGCGCCGCCGCcgcCGCcGGGCccaGGg -3'
miRNA:   3'- -CGCGCGGUGGCGa--GCGaCCCGuagCC- -5'
6372 5' -61.3 NC_001847.1 + 97188 0.73 0.314066
Target:  5'- cGCGgGCCAUggcuaccggugcgguUGCUCGCcgGGGCgcgaGUCGGg -3'
miRNA:   3'- -CGCgCGGUG---------------GCGAGCGa-CCCG----UAGCC- -5'
6372 5' -61.3 NC_001847.1 + 18533 0.73 0.297741
Target:  5'- gGCGCGCCGCCGUcCGCgccGCAgagCGGc -3'
miRNA:   3'- -CGCGCGGUGGCGaGCGaccCGUa--GCC- -5'
6372 5' -61.3 NC_001847.1 + 37349 0.73 0.284646
Target:  5'- cGCGCGCgACCGUggcggaGCUGGcGCGUCu- -3'
miRNA:   3'- -CGCGCGgUGGCGag----CGACC-CGUAGcc -5'
6372 5' -61.3 NC_001847.1 + 101824 0.73 0.278271
Target:  5'- aGCGCGCCGCCacgaacaacagGCUgcgcacaaaCGCggGGGCGUCGu -3'
miRNA:   3'- -CGCGCGGUGG-----------CGA---------GCGa-CCCGUAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.