miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 19766 0.66 0.886176
Target:  5'- -gGCGGgGUGCGGGCuCG-GC---GCAg -3'
miRNA:   3'- gaCGCUgCACGCCCG-GCaCGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 22163 0.66 0.899633
Target:  5'- -aGcCGGCGcaGCGGGCCGgccUGCUcGGGCGa -3'
miRNA:   3'- gaC-GCUGCa-CGCCCGGC---ACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22192 0.74 0.467374
Target:  5'- aUGCG-CGggcGCuGGGCCGUGCUGAAg- -3'
miRNA:   3'- gACGCuGCa--CG-CCCGGCACGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 22282 0.66 0.886176
Target:  5'- -cGCGcGCGUGUcGGCCGUGacGAACGc -3'
miRNA:   3'- gaCGC-UGCACGcCCGGCACgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22513 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22951 0.68 0.806029
Target:  5'- gCUGgGugGgcugggGUGGGCUGgGCUGGGCu -3'
miRNA:   3'- -GACgCugCa-----CGCCCGGCaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 25742 0.66 0.886176
Target:  5'- -aGCGGCG-GCGGGCgGcgGCg--GCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGgCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 26030 0.69 0.720031
Target:  5'- -gGCGGCagcaaaagGUGCGGGCCagGUGCUcgcucggcAGGCAa -3'
miRNA:   3'- gaCGCUG--------CACGCCCGG--CACGA--------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 26994 0.66 0.879101
Target:  5'- uCUGCGGCGgcGCGGuuGCCGUaCUcgGCGg -3'
miRNA:   3'- -GACGCUGCa-CGCC--CGGCAcGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 27755 0.76 0.378373
Target:  5'- uUGCGGCG-GgGGGCUGUGCgGGGCGu -3'
miRNA:   3'- gACGCUGCaCgCCCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 27859 0.66 0.886176
Target:  5'- gUGCGGgcCcUGUGGGCCGcGCUcGAGCGg -3'
miRNA:   3'- gACGCU--GcACGCCCGGCaCGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 28088 0.68 0.787813
Target:  5'- gCUGUGGCGccUGCccgGGGCCGcGCgcGACAc -3'
miRNA:   3'- -GACGCUGC--ACG---CCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 28295 0.76 0.370117
Target:  5'- -cGCGGCGUGCGuGGgUGUGUUAGGCc -3'
miRNA:   3'- gaCGCUGCACGC-CCgGCACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 29073 0.71 0.596755
Target:  5'- gCUGCGugGcggugGCGGGCggCGUGCUGuuUAa -3'
miRNA:   3'- -GACGCugCa----CGCCCG--GCACGAUuuGU- -5'
6373 3' -55.9 NC_001847.1 + 29209 0.66 0.879101
Target:  5'- gCUGCccGACG-GCGGGCUGgaGC-AGACGa -3'
miRNA:   3'- -GACG--CUGCaCGCCCGGCa-CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 30141 0.69 0.720031
Target:  5'- -cGCGACGcGCGGcgcGCCGUGCg----- -3'
miRNA:   3'- gaCGCUGCaCGCC---CGGCACGauuugu -5'
6373 3' -55.9 NC_001847.1 + 30754 0.68 0.787813
Target:  5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5'
6373 3' -55.9 NC_001847.1 + 31307 0.66 0.879101
Target:  5'- gCUGCGGCGcgccGCGGGCgGcgGCcuggugGAGCGc -3'
miRNA:   3'- -GACGCUGCa---CGCCCGgCa-CGa-----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 31963 0.67 0.856546
Target:  5'- -cGCGGCGgcgGCGGGCCccG-UGGACGc -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGcaCgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 32765 0.67 0.832124
Target:  5'- -gGCGGCGcuucGCGacGGCCGgccGCUGGACGc -3'
miRNA:   3'- gaCGCUGCa---CGC--CCGGCa--CGAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.