miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 2104 0.66 0.879101
Target:  5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 2193 0.67 0.8149
Target:  5'- -gGCGGCGUGCGGGCgcacCUcAAACAu -3'
miRNA:   3'- gaCGCUGCACGCCCGgcacGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 3009 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 3157 0.66 0.899633
Target:  5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 5062 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 5221 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 7251 0.67 0.8149
Target:  5'- -gGUGGCuGUGCGGGCgCG-GCggGGGCAc -3'
miRNA:   3'- gaCGCUG-CACGCCCG-GCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5'
6373 3' -55.9 NC_001847.1 + 9007 0.71 0.648462
Target:  5'- uUGCcauCGUGCGcGGCCGcgacccccUGCUAGACGc -3'
miRNA:   3'- gACGcu-GCACGC-CCGGC--------ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 9742 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 10127 0.66 0.899633
Target:  5'- -cGCGGCGaGCGGGcCCG-GCcguAGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCC-GGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 10843 0.66 0.8718
Target:  5'- -cGCGACGgcggcGCGuGGCCGagGCgcGGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-CCGGCa-CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 13164 0.74 0.44869
Target:  5'- gCUGCgccgaGACGUGCGGGUCG-GCgaGAACAa -3'
miRNA:   3'- -GACG-----CUGCACGCCCGGCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14159 0.66 0.879101
Target:  5'- -aGCGGCGgccgGgGcGGCCGcGCUAAagGCAc -3'
miRNA:   3'- gaCGCUGCa---CgC-CCGGCaCGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 14343 0.67 0.856546
Target:  5'- -gGCGugGUgGCGGcGCC-UGCgggGAACGc -3'
miRNA:   3'- gaCGCugCA-CGCC-CGGcACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14711 0.66 0.893022
Target:  5'- -cGCGACGcGCGGGCaGgagGC-GAACGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGgCa--CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 16056 0.7 0.689635
Target:  5'- -cGCGGCGgccGCGGcGCCucUGCUGGGCGc -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGc-ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 16594 0.74 0.457981
Target:  5'- -gGCGGCGUGgGGuGCCGgcgaucagacGCUGAGCAu -3'
miRNA:   3'- gaCGCUGCACgCC-CGGCa---------CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 17903 0.77 0.320992
Target:  5'- -gGCGGCGUgcuguugguaacggGCGGGUCGUGCUcGGACAc -3'
miRNA:   3'- gaCGCUGCA--------------CGCCCGGCACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 18415 0.71 0.627761
Target:  5'- -cGCGGCGUGCaGGGCCuuggccacGUGCgccGCGg -3'
miRNA:   3'- gaCGCUGCACG-CCCGG--------CACGauuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.