miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 67672 0.66 0.899633
Target:  5'- aCUGCGACGacgccGCGGccGCCGcgcgcgcGCUGGACc -3'
miRNA:   3'- -GACGCUGCa----CGCC--CGGCa------CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 47860 0.66 0.8718
Target:  5'- -cGCGGCc-GCGGGCCGUcgGCgc-GCAc -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCA--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 102999 0.66 0.86428
Target:  5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3'
miRNA:   3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 102678 0.66 0.86428
Target:  5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3'
miRNA:   3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 102852 0.66 0.86428
Target:  5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3'
miRNA:   3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 86636 0.66 0.86428
Target:  5'- -cGUGugG-GCGGGCCGcGCcgccccgGAGCGc -3'
miRNA:   3'- gaCGCugCaCGCCCGGCaCGa------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 65878 0.66 0.86428
Target:  5'- -aGCuGACGUGgGGGCCGcccaUGCgccACGc -3'
miRNA:   3'- gaCG-CUGCACgCCCGGC----ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 53934 0.66 0.86428
Target:  5'- -gGCGACG-GCGGcuCUGUGCgcgAGGCGg -3'
miRNA:   3'- gaCGCUGCaCGCCc-GGCACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73780 0.66 0.86428
Target:  5'- -cGCGACGccucgccggUGCGGggcugccuGCCGguggGCUAGGCGc -3'
miRNA:   3'- gaCGCUGC---------ACGCC--------CGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14159 0.66 0.879101
Target:  5'- -aGCGGCGgccgGgGcGGCCGcGCUAAagGCAc -3'
miRNA:   3'- gaCGCUGCa---CgC-CCGGCaCGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 31307 0.66 0.879101
Target:  5'- gCUGCGGCGcgccGCGGGCgGcgGCcuggugGAGCGc -3'
miRNA:   3'- -GACGCUGCa---CGCCCGgCa-CGa-----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 96305 0.66 0.879101
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 3157 0.66 0.899633
Target:  5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 52119 0.66 0.899633
Target:  5'- -aGCGGCc-GCGGGCCGgcgGCgccccAGCGg -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCa--CGau---UUGU- -5'
6373 3' -55.9 NC_001847.1 + 22163 0.66 0.899633
Target:  5'- -aGcCGGCGcaGCGGGCCGgccUGCUcGGGCGa -3'
miRNA:   3'- gaC-GCUGCa-CGCCCGGC---ACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14711 0.66 0.893022
Target:  5'- -cGCGACGcGCGGGCaGgagGC-GAACGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGgCa--CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 62522 0.66 0.886176
Target:  5'- gUGCGGCacggGCGGcacguGCCGUGCggccAGCAg -3'
miRNA:   3'- gACGCUGca--CGCC-----CGGCACGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 22282 0.66 0.886176
Target:  5'- -cGCGcGCGUGUcGGCCGUGacGAACGc -3'
miRNA:   3'- gaCGC-UGCACGcCCGGCACgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 2104 0.66 0.879101
Target:  5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 96389 0.66 0.879101
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.