miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 110222 1.09 0.00253
Target:  5'- aCUGCGACGUGCGGGCCGUGCUAAACAu -3'
miRNA:   3'- -GACGCUGCACGCCCGGCACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 47635 0.78 0.267799
Target:  5'- -gGCGGCG-GCGGGCaCGUGC-AAGCAg -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 38757 0.78 0.287631
Target:  5'- -aGCGugGcgGCGGGcCCGUGCUgGAGCAc -3'
miRNA:   3'- gaCGCugCa-CGCCC-GGCACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 17903 0.77 0.320992
Target:  5'- -gGCGGCGUgcuguugguaacggGCGGGUCGUGCUcGGACAc -3'
miRNA:   3'- gaCGCUGCA--------------CGCCCGGCACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 50674 0.76 0.338344
Target:  5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3'
miRNA:   3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 28295 0.76 0.370117
Target:  5'- -cGCGGCGUGCGuGGgUGUGUUAGGCc -3'
miRNA:   3'- gaCGCUGCACGC-CCgGCACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 27755 0.76 0.378373
Target:  5'- uUGCGGCG-GgGGGCUGUGCgGGGCGu -3'
miRNA:   3'- gACGCUGCaCgCCCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 116444 0.74 0.44869
Target:  5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3'
miRNA:   3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 13164 0.74 0.44869
Target:  5'- gCUGCgccgaGACGUGCGGGUCG-GCgaGAACAa -3'
miRNA:   3'- -GACG-----CUGCACGCCCGGCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 81236 0.74 0.457981
Target:  5'- -aGCGGCG-GCGGGCCaG-GCUGGGCc -3'
miRNA:   3'- gaCGCUGCaCGCCCGG-CaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 16594 0.74 0.457981
Target:  5'- -gGCGGCGUGgGGuGCCGgcgaucagacGCUGAGCAu -3'
miRNA:   3'- gaCGCUGCACgCC-CGGCa---------CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22192 0.74 0.467374
Target:  5'- aUGCG-CGggcGCuGGGCCGUGCUGAAg- -3'
miRNA:   3'- gACGCuGCa--CG-CCCGGCACGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 125326 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22513 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 134164 0.72 0.535643
Target:  5'- -gGUG-CGUGCGGGCCGgcGCaUAGACGc -3'
miRNA:   3'- gaCGCuGCACGCCCGGCa-CG-AUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 82472 0.72 0.552775
Target:  5'- gUGCGGCGUGCcgugggacgagcccGcGGCCGUGC-GGGCGg -3'
miRNA:   3'- gACGCUGCACG--------------C-CCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 86388 0.72 0.555816
Target:  5'- -cGCGGCG-GCGGGCgCGcgGCUGAGuCAu -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCa-CGAUUU-GU- -5'
6373 3' -55.9 NC_001847.1 + 129254 0.72 0.586463
Target:  5'- uCUGCGACG-GCGcGGCCGcccUGCgc-GCAg -3'
miRNA:   3'- -GACGCUGCaCGC-CCGGC---ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 29073 0.71 0.596755
Target:  5'- gCUGCGugGcggugGCGGGCggCGUGCUGuuUAa -3'
miRNA:   3'- -GACGCugCa----CGCCCG--GCACGAUuuGU- -5'
6373 3' -55.9 NC_001847.1 + 81054 0.71 0.627761
Target:  5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3'
miRNA:   3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.