miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 118631 0.66 0.662153
Target:  5'- --gACGUUACCCUcuccaccucagGcCGCGCGCgggaGGCg -3'
miRNA:   3'- ucaUGCGGUGGGA-----------C-GCGCGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 102688 0.66 0.662153
Target:  5'- --cGCGCUGgCggGCGUGUGCUgCGGCa -3'
miRNA:   3'- ucaUGCGGUgGgaCGCGCGCGA-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 102602 0.66 0.662153
Target:  5'- --aGCGCCGagggCUGCGCGCGCaUCGc- -3'
miRNA:   3'- ucaUGCGGUgg--GACGCGCGCG-AGCcg -5'
6374 3' -61.3 NC_001847.1 + 62762 0.66 0.662153
Target:  5'- --cGCGuccaccaccaCCACCgaG-GUGCGCUCGGCc -3'
miRNA:   3'- ucaUGC----------GGUGGgaCgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 59203 0.66 0.662153
Target:  5'- --cACGCCGCgUgugGCG-GCGCaCGGCg -3'
miRNA:   3'- ucaUGCGGUGgGa--CGCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30769 0.66 0.662153
Target:  5'- --cGCGCCgugcugGCCUcGCgGCGCGUcuUCGGCc -3'
miRNA:   3'- ucaUGCGG------UGGGaCG-CGCGCG--AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 29198 0.66 0.662153
Target:  5'- --gGCGCCGCCggGCucccgGUGCuCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCG-----CGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131159 0.66 0.662153
Target:  5'- -cUugGCCGCgCUG-GCGCuGCUcaCGGCc -3'
miRNA:   3'- ucAugCGGUGgGACgCGCG-CGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 113958 0.66 0.662153
Target:  5'- -cUACGCCGCCggGCGCGuCGC-C-GCa -3'
miRNA:   3'- ucAUGCGGUGGgaCGCGC-GCGaGcCG- -5'
6374 3' -61.3 NC_001847.1 + 49352 0.66 0.662153
Target:  5'- --cGCGCCcgcACCCUcGaCGCGCaccGCaUCGGCc -3'
miRNA:   3'- ucaUGCGG---UGGGA-C-GCGCG---CG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 35934 0.66 0.662153
Target:  5'- cGGU-CGCgCGCgCUUGCGCcuggGCGCUgcUGGCg -3'
miRNA:   3'- -UCAuGCG-GUG-GGACGCG----CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 132011 0.66 0.662153
Target:  5'- --gGCGCCGCCggGCucccgGUGCuCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCG-----CGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 118660 0.66 0.662153
Target:  5'- gAGUGCcCCACCCaggcaggGCGgGgGUUgGGCc -3'
miRNA:   3'- -UCAUGcGGUGGGa------CGCgCgCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 121208 0.66 0.662153
Target:  5'- cGGgGCgGCCcCCCUGC-CGCGgCgCGGCa -3'
miRNA:   3'- -UCaUG-CGGuGGGACGcGCGC-GaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 23314 0.66 0.661161
Target:  5'- --gGCGCCGCUgaGC-CGCGCcacguccUUGGCg -3'
miRNA:   3'- ucaUGCGGUGGgaCGcGCGCG-------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 39999 0.66 0.652221
Target:  5'- --cAUGCCggcACCCccaaGCGCaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGG---UGGGa---CGCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 33851 0.66 0.652221
Target:  5'- cAGaGCGCagaggaCUGCGCGCGCUUcuugcaggaGGCg -3'
miRNA:   3'- -UCaUGCGgugg--GACGCGCGCGAG---------CCG- -5'
6374 3' -61.3 NC_001847.1 + 83919 0.66 0.652221
Target:  5'- cGGcGCGCCcgcgagcaggGCCCgcucgaaGUGCGCGCggGGCc -3'
miRNA:   3'- -UCaUGCGG----------UGGGa------CGCGCGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 60835 0.66 0.652221
Target:  5'- gAGggGCGCCcgcgGCgCUGCGCGgCGCcagGGCg -3'
miRNA:   3'- -UCa-UGCGG----UGgGACGCGC-GCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 92248 0.66 0.652221
Target:  5'- ----aGCCGCCUgcaGCuCGCGCUCuuGGCg -3'
miRNA:   3'- ucaugCGGUGGGa--CGcGCGCGAG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.