miRNA display CGI


Results 21 - 40 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 4970 0.67 0.749636
Target:  5'- gCGCCGgGGGggcaGCUggggugcggcgGCCGCGGCa- -3'
miRNA:   3'- aGCGGCgCUCag--UGAa----------CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 5195 0.7 0.520081
Target:  5'- gCGCCGCGAG-CGCggcaaGCgCGCcGCGAc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa---CG-GCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 6360 0.7 0.569472
Target:  5'- gCGCCGCGGG-CGua-GCCGCuGCGGc -3'
miRNA:   3'- aGCGGCGCUCaGUgaaCGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 6866 0.67 0.699722
Target:  5'- aCGCgCGCGGGUagggcCUUGCCGaggagcagugcguCGGCGAg -3'
miRNA:   3'- aGCG-GCGCUCAgu---GAACGGC-------------GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 8068 0.71 0.510396
Target:  5'- cCGCgCGCaGAGgggggCACc-GCCGCGGCGAg -3'
miRNA:   3'- aGCG-GCG-CUCa----GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 8596 0.68 0.660509
Target:  5'- -aGCCGCGcgagcGUCA---GCCGCAGCGc -3'
miRNA:   3'- agCGGCGCu----CAGUgaaCGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 9588 0.67 0.73031
Target:  5'- -gGCCGCGA-UCGa--GCCGCAGCc- -3'
miRNA:   3'- agCGGCGCUcAGUgaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 10047 0.66 0.777839
Target:  5'- cCGCCGCGAacGaCAuCUUgGCCGC-GCGGg -3'
miRNA:   3'- aGCGGCGCU--CaGU-GAA-CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 10125 0.68 0.660509
Target:  5'- uUCGCgGCGAGcggGCccgGCCGUAGCGc -3'
miRNA:   3'- -AGCGgCGCUCag-UGaa-CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 10135 0.67 0.749636
Target:  5'- gUGCUGgGAGgCGC-UGCUGCAGCu- -3'
miRNA:   3'- aGCGGCgCUCaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 10289 0.68 0.649365
Target:  5'- -gGCCGCGcgcucgccAGUCAgUgcggcggUGCUGCGGCGGc -3'
miRNA:   3'- agCGGCGC--------UCAGUgA-------ACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 11040 0.66 0.786995
Target:  5'- uUCGCUGUacuauGCUUgGCCGCAGCGGc -3'
miRNA:   3'- -AGCGGCGcucagUGAA-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 11245 0.69 0.589573
Target:  5'- cCGCCGUuuucGGGaaGCUUGCCGCgGGCGc -3'
miRNA:   3'- aGCGGCG----CUCagUGAACGGCG-UCGCu -5'
6375 3' -58.5 NC_001847.1 + 11509 0.67 0.749636
Target:  5'- cCGCCGCGGGaacuggCACguaGCCGCcgGGUGc -3'
miRNA:   3'- aGCGGCGCUCa-----GUGaa-CGGCG--UCGCu -5'
6375 3' -58.5 NC_001847.1 + 11561 0.67 0.700719
Target:  5'- gCGCCcaGCGGGUgCGgcUGCCGCGGUGc -3'
miRNA:   3'- aGCGG--CGCUCA-GUgaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 12086 0.72 0.418386
Target:  5'- gCGCCGCGGGUCcgGCgc-CCGCGGCc- -3'
miRNA:   3'- aGCGGCGCUCAG--UGaacGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 12923 0.71 0.510396
Target:  5'- cCGCCGCGGGggCGCgcgUGUCGUcguGCGGu -3'
miRNA:   3'- aGCGGCGCUCa-GUGa--ACGGCGu--CGCU- -5'
6375 3' -58.5 NC_001847.1 + 13135 0.71 0.500786
Target:  5'- gCGCCGCGc--CGCcUGCCGCGGCc- -3'
miRNA:   3'- aGCGGCGCucaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 13204 0.68 0.69073
Target:  5'- gUCGcCCGuUGAGUCGg--GCCGCucGGCGAg -3'
miRNA:   3'- -AGC-GGC-GCUCAGUgaaCGGCG--UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 13822 0.7 0.529837
Target:  5'- aCGCgaGCGAGaUCGUUUGCCGCGcGCGGc -3'
miRNA:   3'- aGCGg-CGCUC-AGUGAACGGCGU-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.