miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 979 0.68 0.660509
Target:  5'- -gGCCgGCGGG--GCUUccGCCGCGGCGGc -3'
miRNA:   3'- agCGG-CGCUCagUGAA--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 1104 0.7 0.559483
Target:  5'- -gGCCGCGGGcggCGCc-GCCGCGGCc- -3'
miRNA:   3'- agCGGCGCUCa--GUGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 1230 0.7 0.549544
Target:  5'- gCGCCGCccgcaggccaGGUaCACcgGCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGc---------UCA-GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 1474 0.71 0.510396
Target:  5'- cCGCCGCG-G-CAga-GCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCaGUgaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 1563 0.69 0.589573
Target:  5'- gCGCCGCGAGgccagCACggcGCgCGcCAGCGc -3'
miRNA:   3'- aGCGGCGCUCa----GUGaa-CG-GC-GUCGCu -5'
6375 3' -58.5 NC_001847.1 + 1901 0.75 0.298359
Target:  5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 2351 0.68 0.679686
Target:  5'- cCGCCGCGccggcccGGcCGCgucgGCgGCGGCGGc -3'
miRNA:   3'- aGCGGCGC-------UCaGUGaa--CGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 2417 0.72 0.444963
Target:  5'- cUCGCUGCGccgcuucggccaAGcuUCGCgccaGCCGCAGCGAg -3'
miRNA:   3'- -AGCGGCGC------------UC--AGUGaa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 2580 0.67 0.740019
Target:  5'- gCGCCuGCGcGGcCGCcgcgGCCGCAcGCGAg -3'
miRNA:   3'- aGCGG-CGC-UCaGUGaa--CGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 2801 0.68 0.640235
Target:  5'- -gGCCGCGAG-CGCg-GCCGcCAGCc- -3'
miRNA:   3'- agCGGCGCUCaGUGaaCGGC-GUCGcu -5'
6375 3' -58.5 NC_001847.1 + 2892 0.66 0.768554
Target:  5'- gCGCCGCGcGUCGaguaCCGC-GCGAg -3'
miRNA:   3'- aGCGGCGCuCAGUgaacGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 2980 0.68 0.670616
Target:  5'- gCGCCGcCGGGgccggCGCUggaGCCGCGcGCGc -3'
miRNA:   3'- aGCGGC-GCUCa----GUGAa--CGGCGU-CGCu -5'
6375 3' -58.5 NC_001847.1 + 3235 0.68 0.660509
Target:  5'- cCGCCGCG----GCUUGCgguacaGCAGCGAg -3'
miRNA:   3'- aGCGGCGCucagUGAACGg-----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 3544 0.7 0.529837
Target:  5'- -gGCCGCGAG-CGCg-GCgGCGGCGu -3'
miRNA:   3'- agCGGCGCUCaGUGaaCGgCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 3723 0.7 0.53966
Target:  5'- cCGCCGCGuAG-CGCgcgGCCGCcucGCGGa -3'
miRNA:   3'- aGCGGCGC-UCaGUGaa-CGGCGu--CGCU- -5'
6375 3' -58.5 NC_001847.1 + 3878 0.68 0.680692
Target:  5'- -gGCgGCGGcccGUCGCgcggcGCCGCGGCGu -3'
miRNA:   3'- agCGgCGCU---CAGUGaa---CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 3920 0.66 0.786995
Target:  5'- gCGCCgguuGCGcGcccgCGCUggcGCCGCGGCGGg -3'
miRNA:   3'- aGCGG----CGCuCa---GUGAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 4378 0.72 0.435998
Target:  5'- gCGaCCGCGAGcgCGCgcGCCGCGGCc- -3'
miRNA:   3'- aGC-GGCGCUCa-GUGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 4423 0.71 0.481814
Target:  5'- -gGCgGCGAG-CGCgcGCCGCAGgGAa -3'
miRNA:   3'- agCGgCGCUCaGUGaaCGGCGUCgCU- -5'
6375 3' -58.5 NC_001847.1 + 4579 0.7 0.549544
Target:  5'- gUGgUGCGGGUCGCggUG-CGCGGCGAc -3'
miRNA:   3'- aGCgGCGCUCAGUGa-ACgGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.