Results 21 - 40 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 4970 | 0.67 | 0.749636 |
Target: 5'- gCGCCGgGGGggcaGCUggggugcggcgGCCGCGGCa- -3' miRNA: 3'- aGCGGCgCUCag--UGAa----------CGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 5195 | 0.7 | 0.520081 |
Target: 5'- gCGCCGCGAG-CGCggcaaGCgCGCcGCGAc -3' miRNA: 3'- aGCGGCGCUCaGUGaa---CG-GCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 6360 | 0.7 | 0.569472 |
Target: 5'- gCGCCGCGGG-CGua-GCCGCuGCGGc -3' miRNA: 3'- aGCGGCGCUCaGUgaaCGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 6866 | 0.67 | 0.699722 |
Target: 5'- aCGCgCGCGGGUagggcCUUGCCGaggagcagugcguCGGCGAg -3' miRNA: 3'- aGCG-GCGCUCAgu---GAACGGC-------------GUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 8068 | 0.71 | 0.510396 |
Target: 5'- cCGCgCGCaGAGgggggCACc-GCCGCGGCGAg -3' miRNA: 3'- aGCG-GCG-CUCa----GUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 8596 | 0.68 | 0.660509 |
Target: 5'- -aGCCGCGcgagcGUCA---GCCGCAGCGc -3' miRNA: 3'- agCGGCGCu----CAGUgaaCGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 9588 | 0.67 | 0.73031 |
Target: 5'- -gGCCGCGA-UCGa--GCCGCAGCc- -3' miRNA: 3'- agCGGCGCUcAGUgaaCGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 10047 | 0.66 | 0.777839 |
Target: 5'- cCGCCGCGAacGaCAuCUUgGCCGC-GCGGg -3' miRNA: 3'- aGCGGCGCU--CaGU-GAA-CGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 10125 | 0.68 | 0.660509 |
Target: 5'- uUCGCgGCGAGcggGCccgGCCGUAGCGc -3' miRNA: 3'- -AGCGgCGCUCag-UGaa-CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 10135 | 0.67 | 0.749636 |
Target: 5'- gUGCUGgGAGgCGC-UGCUGCAGCu- -3' miRNA: 3'- aGCGGCgCUCaGUGaACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 10289 | 0.68 | 0.649365 |
Target: 5'- -gGCCGCGcgcucgccAGUCAgUgcggcggUGCUGCGGCGGc -3' miRNA: 3'- agCGGCGC--------UCAGUgA-------ACGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 11040 | 0.66 | 0.786995 |
Target: 5'- uUCGCUGUacuauGCUUgGCCGCAGCGGc -3' miRNA: 3'- -AGCGGCGcucagUGAA-CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 11245 | 0.69 | 0.589573 |
Target: 5'- cCGCCGUuuucGGGaaGCUUGCCGCgGGCGc -3' miRNA: 3'- aGCGGCG----CUCagUGAACGGCG-UCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 11509 | 0.67 | 0.749636 |
Target: 5'- cCGCCGCGGGaacuggCACguaGCCGCcgGGUGc -3' miRNA: 3'- aGCGGCGCUCa-----GUGaa-CGGCG--UCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 11561 | 0.67 | 0.700719 |
Target: 5'- gCGCCcaGCGGGUgCGgcUGCCGCGGUGc -3' miRNA: 3'- aGCGG--CGCUCA-GUgaACGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 12086 | 0.72 | 0.418386 |
Target: 5'- gCGCCGCGGGUCcgGCgc-CCGCGGCc- -3' miRNA: 3'- aGCGGCGCUCAG--UGaacGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 12923 | 0.71 | 0.510396 |
Target: 5'- cCGCCGCGGGggCGCgcgUGUCGUcguGCGGu -3' miRNA: 3'- aGCGGCGCUCa-GUGa--ACGGCGu--CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 13135 | 0.71 | 0.500786 |
Target: 5'- gCGCCGCGc--CGCcUGCCGCGGCc- -3' miRNA: 3'- aGCGGCGCucaGUGaACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 13204 | 0.68 | 0.69073 |
Target: 5'- gUCGcCCGuUGAGUCGg--GCCGCucGGCGAg -3' miRNA: 3'- -AGC-GGC-GCUCAGUgaaCGGCG--UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 13822 | 0.7 | 0.529837 |
Target: 5'- aCGCgaGCGAGaUCGUUUGCCGCGcGCGGc -3' miRNA: 3'- aGCGg-CGCUC-AGUGAACGGCGU-CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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