miRNA display CGI


Results 1 - 20 of 406 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 108851 1.09 0.001476
Target:  5'- cUCGCCGCGAGUCACUUGCCGCAGCGAg -3'
miRNA:   3'- -AGCGGCGCUCAGUGAACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 119361 0.82 0.106343
Target:  5'- cCGCCGCGcGG-CGCUUGCCGcCGGCGAa -3'
miRNA:   3'- aGCGGCGC-UCaGUGAACGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 98760 0.8 0.156402
Target:  5'- gUCGCCGCGGcgcgCGCUgcccggGCCGCGGCGGc -3'
miRNA:   3'- -AGCGGCGCUca--GUGAa-----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 132547 0.78 0.200783
Target:  5'- gCGCgGCGGGcUCGCgugcgGCCGCGGCGGc -3'
miRNA:   3'- aGCGgCGCUC-AGUGaa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 58764 0.77 0.216093
Target:  5'- -gGCCGCGAcgGUCGCUggUGCUGCAGCu- -3'
miRNA:   3'- agCGGCGCU--CAGUGA--ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 78328 0.77 0.216093
Target:  5'- gCGCCGCGGGcCcgGCUUgggcGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUCaG--UGAA----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 73810 0.77 0.232392
Target:  5'- aCGCCGUG-GUCGCcgcGCUGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCAGUGaa-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 46848 0.76 0.249714
Target:  5'- cUCGCCGCGAGcCGCgucgGCCcaGCAGgCGAa -3'
miRNA:   3'- -AGCGGCGCUCaGUGaa--CGG--CGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 38956 0.76 0.261845
Target:  5'- -gGCCGCGAG-CGCcauggcggcgGCCGCGGCGGg -3'
miRNA:   3'- agCGGCGCUCaGUGaa--------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 36375 0.76 0.268088
Target:  5'- cCGCCGCGgcccGGgcagCGCgcGCCGCGGCGAc -3'
miRNA:   3'- aGCGGCGC----UCa---GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34133 0.76 0.274451
Target:  5'- cUGCCGCG-GUgGCc-GCCGCGGCGAg -3'
miRNA:   3'- aGCGGCGCuCAgUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 97083 0.75 0.280935
Target:  5'- cCGCCGCGcgcaGCUUaGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCucagUGAA-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 28948 0.75 0.294265
Target:  5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3'
miRNA:   3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 52207 0.75 0.294265
Target:  5'- -gGCCGCGGGUCGCg-GCCucgaCAGCGAg -3'
miRNA:   3'- agCGGCGCUCAGUGaaCGGc---GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104714 0.75 0.298359
Target:  5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 1901 0.75 0.298359
Target:  5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 31209 0.75 0.315176
Target:  5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134022 0.75 0.315176
Target:  5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 62817 0.74 0.329729
Target:  5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3'
miRNA:   3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 100354 0.74 0.33719
Target:  5'- -gGCCGCGGGUCguagccgcGCgccgcgGCCGCGGCGc -3'
miRNA:   3'- agCGGCGCUCAG--------UGaa----CGGCGUCGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.