Results 1 - 20 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 108851 | 1.09 | 0.001476 |
Target: 5'- cUCGCCGCGAGUCACUUGCCGCAGCGAg -3' miRNA: 3'- -AGCGGCGCUCAGUGAACGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 119361 | 0.82 | 0.106343 |
Target: 5'- cCGCCGCGcGG-CGCUUGCCGcCGGCGAa -3' miRNA: 3'- aGCGGCGC-UCaGUGAACGGC-GUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 98760 | 0.8 | 0.156402 |
Target: 5'- gUCGCCGCGGcgcgCGCUgcccggGCCGCGGCGGc -3' miRNA: 3'- -AGCGGCGCUca--GUGAa-----CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 132547 | 0.78 | 0.200783 |
Target: 5'- gCGCgGCGGGcUCGCgugcgGCCGCGGCGGc -3' miRNA: 3'- aGCGgCGCUC-AGUGaa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 58764 | 0.77 | 0.216093 |
Target: 5'- -gGCCGCGAcgGUCGCUggUGCUGCAGCu- -3' miRNA: 3'- agCGGCGCU--CAGUGA--ACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 78328 | 0.77 | 0.216093 |
Target: 5'- gCGCCGCGGGcCcgGCUUgggcGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGCUCaG--UGAA----CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 73810 | 0.77 | 0.232392 |
Target: 5'- aCGCCGUG-GUCGCcgcGCUGCAGCGGc -3' miRNA: 3'- aGCGGCGCuCAGUGaa-CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 46848 | 0.76 | 0.249714 |
Target: 5'- cUCGCCGCGAGcCGCgucgGCCcaGCAGgCGAa -3' miRNA: 3'- -AGCGGCGCUCaGUGaa--CGG--CGUC-GCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 38956 | 0.76 | 0.261845 |
Target: 5'- -gGCCGCGAG-CGCcauggcggcgGCCGCGGCGGg -3' miRNA: 3'- agCGGCGCUCaGUGaa--------CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 36375 | 0.76 | 0.268088 |
Target: 5'- cCGCCGCGgcccGGgcagCGCgcGCCGCGGCGAc -3' miRNA: 3'- aGCGGCGC----UCa---GUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 34133 | 0.76 | 0.274451 |
Target: 5'- cUGCCGCG-GUgGCc-GCCGCGGCGAg -3' miRNA: 3'- aGCGGCGCuCAgUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 97083 | 0.75 | 0.280935 |
Target: 5'- cCGCCGCGcgcaGCUUaGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGCucagUGAA-CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 28948 | 0.75 | 0.294265 |
Target: 5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3' miRNA: 3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 52207 | 0.75 | 0.294265 |
Target: 5'- -gGCCGCGGGUCGCg-GCCucgaCAGCGAg -3' miRNA: 3'- agCGGCGCUCAGUGaaCGGc---GUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 104714 | 0.75 | 0.298359 |
Target: 5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 1901 | 0.75 | 0.298359 |
Target: 5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 31209 | 0.75 | 0.315176 |
Target: 5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134022 | 0.75 | 0.315176 |
Target: 5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 62817 | 0.74 | 0.329729 |
Target: 5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3' miRNA: 3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 100354 | 0.74 | 0.33719 |
Target: 5'- -gGCCGCGGGUCguagccgcGCgccgcgGCCGCGGCGc -3' miRNA: 3'- agCGGCGCUCAG--------UGaa----CGGCGUCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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