miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 30865 0.65 0.802242
Target:  5'- cUCGCCGaaguCGAuggcguuugcgccaGUCGCccgGCCGCAGCc- -3'
miRNA:   3'- -AGCGGC----GCU--------------CAGUGaa-CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 80472 0.65 0.803125
Target:  5'- cCGCCGuCGGGcCGCgcuccccguuCCGCAGCGc -3'
miRNA:   3'- aGCGGC-GCUCaGUGaac-------GGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 68838 0.66 0.786995
Target:  5'- gCGCCGCGAagagcucgggCGCgagGCgGCGGCGu -3'
miRNA:   3'- aGCGGCGCUca--------GUGaa-CGgCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 134049 0.66 0.786085
Target:  5'- aCGCgGCgucuccaGAGUCACagGCggggaGCAGCGAa -3'
miRNA:   3'- aGCGgCG-------CUCAGUGaaCGg----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 115418 0.66 0.783349
Target:  5'- cCGCCGCGuccggccaaccucGUCGCgggGCCGgAGCc- -3'
miRNA:   3'- aGCGGCGCu------------CAGUGaa-CGGCgUCGcu -5'
6375 3' -58.5 NC_001847.1 + 68504 0.66 0.781517
Target:  5'- gCGCCGCGcgagaacucaaccucGGUgCGCUUGuCCGCAaUGAg -3'
miRNA:   3'- aGCGGCGC---------------UCA-GUGAAC-GGCGUcGCU- -5'
6375 3' -58.5 NC_001847.1 + 29093 0.66 0.777839
Target:  5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3'
miRNA:   3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 119731 0.66 0.777839
Target:  5'- cUCGCCGUGccgCGCUccaggGCCGCccaguGGCGGa -3'
miRNA:   3'- -AGCGGCGCucaGUGAa----CGGCG-----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 108140 0.66 0.777839
Target:  5'- gCGCCGcCGAGUacggcaacCGCgccGCCGCAGaCGc -3'
miRNA:   3'- aGCGGC-GCUCA--------GUGaa-CGGCGUC-GCu -5'
6375 3' -58.5 NC_001847.1 + 93202 0.66 0.777839
Target:  5'- -gGCCGCGAG-CGCgacUGC-GaCGGCGAg -3'
miRNA:   3'- agCGGCGCUCaGUGa--ACGgC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 3920 0.66 0.786995
Target:  5'- gCGCCgguuGCGcGcccgCGCUggcGCCGCGGCGGg -3'
miRNA:   3'- aGCGG----CGCuCa---GUGAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 96934 0.66 0.786995
Target:  5'- gCGUauaGCGGGUCGCc-GCUaGCGGCGGc -3'
miRNA:   3'- aGCGg--CGCUCAGUGaaCGG-CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 69325 0.66 0.796014
Target:  5'- aCGCCGUGGGcCAgcaGCCGCgcagcuAGCGGa -3'
miRNA:   3'- aGCGGCGCUCaGUgaaCGGCG------UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 54515 0.66 0.796014
Target:  5'- gCGCCGCc-GUCGCcaucggcaaCCGCGGCGGg -3'
miRNA:   3'- aGCGGCGcuCAGUGaac------GGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 53460 0.66 0.796014
Target:  5'- gCGCaGCGAG-CACUcGCCcgcgaGCAGCGu -3'
miRNA:   3'- aGCGgCGCUCaGUGAaCGG-----CGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 111276 0.66 0.796014
Target:  5'- gCGCUGCGAaagCACUUuaCGC-GCGAg -3'
miRNA:   3'- aGCGGCGCUca-GUGAAcgGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 52098 0.66 0.796014
Target:  5'- gCGCCGCGGcccaagcgCACUagcgGCCGCgggccGGCGGc -3'
miRNA:   3'- aGCGGCGCUca------GUGAa---CGGCG-----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 81047 0.66 0.794222
Target:  5'- gCGCgGCGAG-CGCcucuaggUUGCCggcgaagGCGGCGAc -3'
miRNA:   3'- aGCGgCGCUCaGUG-------AACGG-------CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 101050 0.66 0.786995
Target:  5'- cCGCCgcGCGAGcCACggcgGCCGCcacGCGc -3'
miRNA:   3'- aGCGG--CGCUCaGUGaa--CGGCGu--CGCu -5'
6375 3' -58.5 NC_001847.1 + 99696 0.66 0.786995
Target:  5'- gCGCCGCGGccgcGUCGC--GCCGCAcCGu -3'
miRNA:   3'- aGCGGCGCU----CAGUGaaCGGCGUcGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.