Results 1 - 20 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 41527 | 0.73 | 0.384497 |
Target: 5'- -gGCCGUGGGUCua-UGCCGCcGCGGg -3' miRNA: 3'- agCGGCGCUCAGugaACGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 58764 | 0.77 | 0.216093 |
Target: 5'- -gGCCGCGAcgGUCGCUggUGCUGCAGCu- -3' miRNA: 3'- agCGGCGCU--CAGUGA--ACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 46848 | 0.76 | 0.249714 |
Target: 5'- cUCGCCGCGAGcCGCgucgGCCcaGCAGgCGAa -3' miRNA: 3'- -AGCGGCGCUCaGUGaa--CGG--CGUC-GCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 101003 | 0.74 | 0.344772 |
Target: 5'- cCGCCGCGgcggcAGUUACUgccGCCGCcGCGGc -3' miRNA: 3'- aGCGGCGC-----UCAGUGAa--CGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 31936 | 0.74 | 0.360302 |
Target: 5'- cCGCgGCGGGUaagcggacgaGCcUGCCGCGGCGGc -3' miRNA: 3'- aGCGgCGCUCAg---------UGaACGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 36375 | 0.76 | 0.268088 |
Target: 5'- cCGCCGCGgcccGGgcagCGCgcGCCGCGGCGAc -3' miRNA: 3'- aGCGGCGC----UCa---GUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 104714 | 0.75 | 0.298359 |
Target: 5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 62817 | 0.74 | 0.329729 |
Target: 5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3' miRNA: 3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 20851 | 0.73 | 0.384497 |
Target: 5'- gUCGCaaaGCGAGUCugc-GCUGCGGCGGc -3' miRNA: 3'- -AGCGg--CGCUCAGugaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 12086 | 0.72 | 0.418386 |
Target: 5'- gCGCCGCGGGUCcgGCgc-CCGCGGCc- -3' miRNA: 3'- aGCGGCGCUCAG--UGaacGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 80472 | 0.65 | 0.803125 |
Target: 5'- cCGCCGuCGGGcCGCgcuccccguuCCGCAGCGc -3' miRNA: 3'- aGCGGC-GCUCaGUGaac-------GGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 97083 | 0.75 | 0.280935 |
Target: 5'- cCGCCGCGcgcaGCUUaGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGCucagUGAA-CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 34133 | 0.76 | 0.274451 |
Target: 5'- cUGCCGCG-GUgGCc-GCCGCGGCGAg -3' miRNA: 3'- aGCGGCGCuCAgUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 100525 | 0.73 | 0.375501 |
Target: 5'- -gGCUGCGGGUCGCggagugggUgggcggggagccgGCCGCGGCGAu -3' miRNA: 3'- agCGGCGCUCAGUGa-------A-------------CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 43555 | 0.73 | 0.376313 |
Target: 5'- gCGCCGCGGuuugcgCGCUUcGCCGCGGgCGAc -3' miRNA: 3'- aGCGGCGCUca----GUGAA-CGGCGUC-GCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 28948 | 0.75 | 0.294265 |
Target: 5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3' miRNA: 3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 133523 | 0.72 | 0.409744 |
Target: 5'- gCGCCGCG-GU-GC-UGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCuCAgUGaACGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 83042 | 0.72 | 0.435998 |
Target: 5'- -gGCCGCuAGUgCGCUuggGCCGCGGCGc -3' miRNA: 3'- agCGGCGcUCA-GUGAa--CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134022 | 0.75 | 0.315176 |
Target: 5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 83878 | 0.74 | 0.360302 |
Target: 5'- gCGCCGCGGcgcugcaucucGUCACUUucaucgGCCGgCAGCGGc -3' miRNA: 3'- aGCGGCGCU-----------CAGUGAA------CGGC-GUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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