miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 58764 0.77 0.216093
Target:  5'- -gGCCGCGAcgGUCGCUggUGCUGCAGCu- -3'
miRNA:   3'- agCGGCGCU--CAGUGA--ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 133523 0.72 0.409744
Target:  5'- gCGCCGCG-GU-GC-UGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCAgUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 83042 0.72 0.435998
Target:  5'- -gGCCGCuAGUgCGCUuggGCCGCGGCGc -3'
miRNA:   3'- agCGGCGcUCA-GUGAa--CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 80472 0.65 0.803125
Target:  5'- cCGCCGuCGGGcCGCgcuccccguuCCGCAGCGc -3'
miRNA:   3'- aGCGGC-GCUCaGUGaac-------GGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 97083 0.75 0.280935
Target:  5'- cCGCCGCGcgcaGCUUaGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCucagUGAA-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 28948 0.75 0.294265
Target:  5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3'
miRNA:   3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134022 0.75 0.315176
Target:  5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 62817 0.74 0.329729
Target:  5'- -aGCCGggcCGAGUCGCgcagcUGCCGCAGCc- -3'
miRNA:   3'- agCGGC---GCUCAGUGa----ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 83878 0.74 0.360302
Target:  5'- gCGCCGCGGcgcugcaucucGUCACUUucaucgGCCGgCAGCGGc -3'
miRNA:   3'- aGCGGCGCU-----------CAGUGAA------CGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 36141 0.73 0.401214
Target:  5'- gCGCCGCG-GaCGCggGCCuGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCaGUGaaCGG-CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 43555 0.73 0.376313
Target:  5'- gCGCCGCGGuuugcgCGCUUcGCCGCGGgCGAc -3'
miRNA:   3'- aGCGGCGCUca----GUGAA-CGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 31936 0.74 0.360302
Target:  5'- cCGCgGCGGGUaagcggacgaGCcUGCCGCGGCGGc -3'
miRNA:   3'- aGCGgCGCUCAg---------UGaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 46848 0.76 0.249714
Target:  5'- cUCGCCGCGAGcCGCgucgGCCcaGCAGgCGAa -3'
miRNA:   3'- -AGCGGCGCUCaGUGaa--CGG--CGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 20851 0.73 0.384497
Target:  5'- gUCGCaaaGCGAGUCugc-GCUGCGGCGGc -3'
miRNA:   3'- -AGCGg--CGCUCAGugaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 36375 0.76 0.268088
Target:  5'- cCGCCGCGgcccGGgcagCGCgcGCCGCGGCGAc -3'
miRNA:   3'- aGCGGCGC----UCa---GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 101003 0.74 0.344772
Target:  5'- cCGCCGCGgcggcAGUUACUgccGCCGCcGCGGc -3'
miRNA:   3'- aGCGGCGC-----UCAGUGAa--CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 41527 0.73 0.384497
Target:  5'- -gGCCGUGGGUCua-UGCCGCcGCGGg -3'
miRNA:   3'- agCGGCGCUCAGugaACGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 12086 0.72 0.418386
Target:  5'- gCGCCGCGGGUCcgGCgc-CCGCGGCc- -3'
miRNA:   3'- aGCGGCGCUCAG--UGaacGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 34133 0.76 0.274451
Target:  5'- cUGCCGCG-GUgGCc-GCCGCGGCGAg -3'
miRNA:   3'- aGCGGCGCuCAgUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104714 0.75 0.298359
Target:  5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.