Results 1 - 20 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 134529 | 0.68 | 0.680692 |
Target: 5'- -aGgCGCGGGcCGCgcGCCGCuGCGGa -3' miRNA: 3'- agCgGCGCUCaGUGaaCGGCGuCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134235 | 0.69 | 0.609796 |
Target: 5'- gCGCCgGCGGGcgGCggccggcgGCCGCGGCGGc -3' miRNA: 3'- aGCGG-CGCUCagUGaa------CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134128 | 0.66 | 0.756307 |
Target: 5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3' miRNA: 3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134049 | 0.66 | 0.786085 |
Target: 5'- aCGCgGCgucuccaGAGUCACagGCggggaGCAGCGAa -3' miRNA: 3'- aGCGgCG-------CUCAGUGaaCGg----CGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 134022 | 0.75 | 0.315176 |
Target: 5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 133950 | 0.68 | 0.69073 |
Target: 5'- gCGcCCGaCGAGcUGCcgGCCGCGGCGGu -3' miRNA: 3'- aGC-GGC-GCUCaGUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 133672 | 0.7 | 0.529837 |
Target: 5'- cCGCUGCGGcUC---UGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGCUcAGugaACGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 133523 | 0.72 | 0.409744 |
Target: 5'- gCGCCGCG-GU-GC-UGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCuCAgUGaACGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 133209 | 0.7 | 0.569472 |
Target: 5'- gCGCCGgcggccCGAGUgGCcgccgcGCCGCGGCGGg -3' miRNA: 3'- aGCGGC------GCUCAgUGaa----CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 132547 | 0.78 | 0.200783 |
Target: 5'- gCGCgGCGGGcUCGCgugcgGCCGCGGCGGc -3' miRNA: 3'- aGCGgCGCUC-AGUGaa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 132289 | 0.71 | 0.500786 |
Target: 5'- aCGcCCGCGAGUCGCa-GCgGCAugGCGGa -3' miRNA: 3'- aGC-GGCGCUCAGUGaaCGgCGU--CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 132012 | 0.71 | 0.510396 |
Target: 5'- gCGCCGcCGGGcUCccgguGCUcucgGCCGCGGCGGg -3' miRNA: 3'- aGCGGC-GCUC-AG-----UGAa---CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131959 | 0.71 | 0.481814 |
Target: 5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3' miRNA: 3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131906 | 0.66 | 0.777839 |
Target: 5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3' miRNA: 3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131905 | 0.68 | 0.640235 |
Target: 5'- cUCGCUGCu-GUacCGCaaGCCGCGGCGGc -3' miRNA: 3'- -AGCGGCGcuCA--GUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131700 | 0.69 | 0.589573 |
Target: 5'- gCGCUGUGGG-CGC-UGCCGCacguGGCGGc -3' miRNA: 3'- aGCGGCGCUCaGUGaACGGCG----UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131608 | 0.67 | 0.740019 |
Target: 5'- cCGCCGCGc-UCGCg-GCCGUAGuCGGc -3' miRNA: 3'- aGCGGCGCucAGUGaaCGGCGUC-GCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131528 | 0.66 | 0.768554 |
Target: 5'- gCGCCGCGAcGcCAUggccugGCUGCAgagcGCGAa -3' miRNA: 3'- aGCGGCGCU-CaGUGaa----CGGCGU----CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131446 | 0.67 | 0.720518 |
Target: 5'- aUUGCCGCGccuaccuguGGUgCGCgcagGCuCGCGGCGGc -3' miRNA: 3'- -AGCGGCGC---------UCA-GUGaa--CG-GCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131199 | 0.7 | 0.53966 |
Target: 5'- gCGCUGUGGGUCGCgcucGCCGCccgcugccAGCGc -3' miRNA: 3'- aGCGGCGCUCAGUGaa--CGGCG--------UCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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