miRNA display CGI


Results 41 - 60 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 14046 0.7 0.559483
Target:  5'- -gGCCGCGAGcCGCUagguucgcgGCCGguGCu- -3'
miRNA:   3'- agCGGCGCUCaGUGAa--------CGGCguCGcu -5'
6375 3' -58.5 NC_001847.1 + 14420 0.68 0.69073
Target:  5'- cUCGCaGCGGGUCGCgacUGCCucgaCGGCGc -3'
miRNA:   3'- -AGCGgCGCUCAGUGa--ACGGc---GUCGCu -5'
6375 3' -58.5 NC_001847.1 + 14633 0.67 0.710651
Target:  5'- uUCGaCCGCGGcGcUCGCgcGCCGCucgcuGCGAg -3'
miRNA:   3'- -AGC-GGCGCU-C-AGUGaaCGGCGu----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 14924 0.72 0.444963
Target:  5'- cUCGCCGCGAuaCACaagGCUGCgAGCGGg -3'
miRNA:   3'- -AGCGGCGCUcaGUGaa-CGGCG-UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 15014 0.69 0.619936
Target:  5'- cCGCgGUGGGgccgCGCgaGCCGCGGCc- -3'
miRNA:   3'- aGCGgCGCUCa---GUGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 15076 0.67 0.749636
Target:  5'- -gGCC-CGGGgaUCGCcUGCgGCAGCGGg -3'
miRNA:   3'- agCGGcGCUC--AGUGaACGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 15532 0.7 0.549544
Target:  5'- -aGCCGCGGGcUGCUggcGCCGguGCGc -3'
miRNA:   3'- agCGGCGCUCaGUGAa--CGGCguCGCu -5'
6375 3' -58.5 NC_001847.1 + 15928 0.67 0.720518
Target:  5'- cCGCCGCcc--CGCggugGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGcucaGUGaa--CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 15987 0.67 0.720518
Target:  5'- cCGCCGCcc--CGCggcgGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGcucaGUGaa--CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 16047 0.67 0.720518
Target:  5'- cCGCCGCcc--CGCggcgGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGcucaGUGaa--CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 17867 0.67 0.737116
Target:  5'- gCGCCGcCGGGUCGCccGUCcucgggcggggcggGCGGCGGc -3'
miRNA:   3'- aGCGGC-GCUCAGUGaaCGG--------------CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 18525 0.66 0.768554
Target:  5'- gCGCUGCGGG-CGCgccGCCGUccgcgccgcagAGCGGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa-CGGCG-----------UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 18948 0.68 0.680692
Target:  5'- cCGCCGCGGcGUCcgggcggcgACgaccagcgcgGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCU-CAG---------UGaa--------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 19334 0.7 0.53966
Target:  5'- cCGCCGCagcgcAGcgCGCggaGCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGc----UCa-GUGaa-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 19510 0.67 0.710651
Target:  5'- gUGUCGCGGGaucgCGCUUGCgGCAGa-- -3'
miRNA:   3'- aGCGGCGCUCa---GUGAACGgCGUCgcu -5'
6375 3' -58.5 NC_001847.1 + 19579 0.72 0.408886
Target:  5'- aUCGCCGCGGcccgUACUuaagcguUGCCGUGGCGGu -3'
miRNA:   3'- -AGCGGCGCUca--GUGA-------ACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 20120 0.67 0.749636
Target:  5'- cUCGCCGCcc-UCAUg-GCgCGCGGCGAa -3'
miRNA:   3'- -AGCGGCGcucAGUGaaCG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 20447 0.68 0.660509
Target:  5'- gUCGgCGCGGaaggcGUCcaGCagGCCGCGGCGGc -3'
miRNA:   3'- -AGCgGCGCU-----CAG--UGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 20851 0.73 0.384497
Target:  5'- gUCGCaaaGCGAGUCugc-GCUGCGGCGGc -3'
miRNA:   3'- -AGCGg--CGCUCAGugaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 21953 0.7 0.53966
Target:  5'- cUCGUCGUccGGG-CGCUggGCCGCGGCGc -3'
miRNA:   3'- -AGCGGCG--CUCaGUGAa-CGGCGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.