miRNA display CGI


Results 21 - 40 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 101050 0.66 0.786995
Target:  5'- cCGCCgcGCGAGcCACggcgGCCGCcacGCGc -3'
miRNA:   3'- aGCGG--CGCUCaGUGaa--CGGCGu--CGCu -5'
6375 3' -58.5 NC_001847.1 + 99696 0.66 0.786995
Target:  5'- gCGCCGCGGccgcGUCGC--GCCGCAcCGu -3'
miRNA:   3'- aGCGGCGCU----CAGUGaaCGGCGUcGCu -5'
6375 3' -58.5 NC_001847.1 + 96934 0.66 0.786995
Target:  5'- gCGUauaGCGGGUCGCc-GCUaGCGGCGGc -3'
miRNA:   3'- aGCGg--CGCUCAGUGaaCGG-CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 3920 0.66 0.786995
Target:  5'- gCGCCgguuGCGcGcccgCGCUggcGCCGCGGCGGg -3'
miRNA:   3'- aGCGG----CGCuCa---GUGAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 68838 0.66 0.786995
Target:  5'- gCGCCGCGAagagcucgggCGCgagGCgGCGGCGu -3'
miRNA:   3'- aGCGGCGCUca--------GUGaa-CGgCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 134049 0.66 0.786085
Target:  5'- aCGCgGCgucuccaGAGUCACagGCggggaGCAGCGAa -3'
miRNA:   3'- aGCGgCG-------CUCAGUGaaCGg----CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 115418 0.66 0.783349
Target:  5'- cCGCCGCGuccggccaaccucGUCGCgggGCCGgAGCc- -3'
miRNA:   3'- aGCGGCGCu------------CAGUGaa-CGGCgUCGcu -5'
6375 3' -58.5 NC_001847.1 + 68504 0.66 0.781517
Target:  5'- gCGCCGCGcgagaacucaaccucGGUgCGCUUGuCCGCAaUGAg -3'
miRNA:   3'- aGCGGCGC---------------UCA-GUGAAC-GGCGUcGCU- -5'
6375 3' -58.5 NC_001847.1 + 69217 0.66 0.777839
Target:  5'- gCGuCCGCGGGgaaCGCcgacGCCGCgacGGCGAa -3'
miRNA:   3'- aGC-GGCGCUCa--GUGaa--CGGCG---UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 131906 0.66 0.777839
Target:  5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3'
miRNA:   3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 34772 0.66 0.777839
Target:  5'- -gGCUGCGcGcCGCg-GCCGCGGCGc -3'
miRNA:   3'- agCGGCGCuCaGUGaaCGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 26306 0.66 0.777839
Target:  5'- cUCGCgGCGAGUCG--UGggGCAGCGu -3'
miRNA:   3'- -AGCGgCGCUCAGUgaACggCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 108140 0.66 0.777839
Target:  5'- gCGCCGcCGAGUacggcaacCGCgccGCCGCAGaCGc -3'
miRNA:   3'- aGCGGC-GCUCA--------GUGaa-CGGCGUC-GCu -5'
6375 3' -58.5 NC_001847.1 + 49283 0.66 0.777839
Target:  5'- cUCGCCGCgcgGAGcCGCgacucGCUGCuGGCGGu -3'
miRNA:   3'- -AGCGGCG---CUCaGUGaa---CGGCG-UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 32127 0.66 0.777839
Target:  5'- cCGCCGCcGG-CGCUgggcGCCGCcGCGc -3'
miRNA:   3'- aGCGGCGcUCaGUGAa---CGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 119731 0.66 0.777839
Target:  5'- cUCGCCGUGccgCGCUccaggGCCGCccaguGGCGGa -3'
miRNA:   3'- -AGCGGCGCucaGUGAa----CGGCG-----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 29093 0.66 0.777839
Target:  5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3'
miRNA:   3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 10047 0.66 0.777839
Target:  5'- cCGCCGCGAacGaCAuCUUgGCCGC-GCGGg -3'
miRNA:   3'- aGCGGCGCU--CaGU-GAA-CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 77326 0.66 0.777839
Target:  5'- uUCGaCGCGGGgCACUgcgcgcUGCUggGCGGCGAc -3'
miRNA:   3'- -AGCgGCGCUCaGUGA------ACGG--CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 93202 0.66 0.777839
Target:  5'- -gGCCGCGAG-CGCgacUGC-GaCGGCGAg -3'
miRNA:   3'- agCGGCGCUCaGUGa--ACGgC-GUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.