Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 76504 | 0.66 | 0.947973 |
Target: 5'- gACCcGGcggaaaUCUUCGUGgcccagaugAUGCgGCAGCGCu -3' miRNA: 3'- -UGGaCC------AGAAGCACa--------UGUG-CGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 55377 | 0.66 | 0.933763 |
Target: 5'- gACCUGGUUUcUG-GUGCcgcugaucGCGCuGGCGCu -3' miRNA: 3'- -UGGACCAGAaGCaCAUG--------UGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 101829 | 0.66 | 0.943482 |
Target: 5'- gGCC--GUCUUCgGUGUGCGcCGUuGCGCc -3' miRNA: 3'- -UGGacCAGAAG-CACAUGU-GCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 125415 | 0.66 | 0.943942 |
Target: 5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3' miRNA: 3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 97801 | 0.66 | 0.95222 |
Target: 5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3' miRNA: 3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 16289 | 0.66 | 0.95222 |
Target: 5'- cGCCggcgGGUCgaCGUaUACcgucaccCGCGGCGCg -3' miRNA: 3'- -UGGa---CCAGaaGCAcAUGu------GCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 96803 | 0.66 | 0.95222 |
Target: 5'- -gCUGGg--UCGggggGCGCGCAGCGg -3' miRNA: 3'- ugGACCagaAGCaca-UGUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 74124 | 0.67 | 0.898647 |
Target: 5'- cGCCcGGgga-UGUG-ACGCGCGGCGCc -3' miRNA: 3'- -UGGaCCagaaGCACaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 2049 | 0.67 | 0.911341 |
Target: 5'- gGCCacgauagGGUCUUUG-GUGCGCa-GGCGCa -3' miRNA: 3'- -UGGa------CCAGAAGCaCAUGUGcgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 32878 | 0.67 | 0.898647 |
Target: 5'- uCCUGGcgCUggaGggcacgGUGCGCGCcGCGCg -3' miRNA: 3'- uGGACCa-GAag-Ca-----CAUGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 131504 | 0.67 | 0.911341 |
Target: 5'- gGCgCUGGUggacCUg-GUGUACGCGCGcCGCg -3' miRNA: 3'- -UG-GACCA----GAagCACAUGUGCGUcGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 27422 | 0.67 | 0.91732 |
Target: 5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3' miRNA: 3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 117704 | 0.67 | 0.92305 |
Target: 5'- cACCgaGGg---CGUGUACACuuGGCGCc -3' miRNA: 3'- -UGGa-CCagaaGCACAUGUGcgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 19616 | 0.67 | 0.92305 |
Target: 5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3' miRNA: 3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 85211 | 0.67 | 0.898647 |
Target: 5'- cGCCacgGcGUCcaaCGUGcgcACGCGCAGCGCc -3' miRNA: 3'- -UGGa--C-CAGaa-GCACa--UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 78541 | 0.67 | 0.92305 |
Target: 5'- gGCCUcGGccUCUUCGau--CACGCAGuCGCu -3' miRNA: 3'- -UGGA-CC--AGAAGCacauGUGCGUC-GCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 63304 | 0.67 | 0.898647 |
Target: 5'- cACCgGGUCcagcagcgCGUGguucaGCGCGGCGUg -3' miRNA: 3'- -UGGaCCAGaa------GCACaug--UGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 82330 | 0.67 | 0.928531 |
Target: 5'- cGCCcgaGGUCca-GUGU--GCGCGGCGCc -3' miRNA: 3'- -UGGa--CCAGaagCACAugUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 74482 | 0.67 | 0.911341 |
Target: 5'- -gCUGGg---CGUGUugAUGCAGCaGCc -3' miRNA: 3'- ugGACCagaaGCACAugUGCGUCG-CG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 13739 | 0.67 | 0.91732 |
Target: 5'- uCCUGGg---CGUGgggcugauCGCGCAGCGg -3' miRNA: 3'- uGGACCagaaGCACau------GUGCGUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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