Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6376 | 3' | -54 | NC_001847.1 | + | 96803 | 0.66 | 0.95222 |
Target: 5'- -gCUGGg--UCGggggGCGCGCAGCGg -3' miRNA: 3'- ugGACCagaAGCaca-UGUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 116363 | 0.66 | 0.943482 |
Target: 5'- -gCUGGUgUgCGUgGUGCugGC-GCGCu -3' miRNA: 3'- ugGACCAgAaGCA-CAUGugCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 125415 | 0.66 | 0.943942 |
Target: 5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3' miRNA: 3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 54036 | 0.66 | 0.95222 |
Target: 5'- uUCUGGaugUCcUCGUcgGCGCGCGGCGa -3' miRNA: 3'- uGGACC---AGaAGCAcaUGUGCGUCGCg -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 47857 | 0.66 | 0.933763 |
Target: 5'- ---aGGUCg-CGUGcugcgcgggcGCGCGCAGCGCg -3' miRNA: 3'- uggaCCAGaaGCACa---------UGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 3056 | 0.66 | 0.938746 |
Target: 5'- aGCCgcaggcgcaGGUUgugcUCGUaGUGCA-GCAGCGCg -3' miRNA: 3'- -UGGa--------CCAGa---AGCA-CAUGUgCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 64088 | 0.66 | 0.938746 |
Target: 5'- cCCUcgaGGUgUUCGUGcuggACGugucCGCGGCGCc -3' miRNA: 3'- uGGA---CCAgAAGCACa---UGU----GCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 121717 | 0.66 | 0.938746 |
Target: 5'- ---cGGUCUUCacgGcGCGCGCuGGCGCg -3' miRNA: 3'- uggaCCAGAAGca-CaUGUGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 93341 | 0.66 | 0.938746 |
Target: 5'- cGCCacGUCcUCGUa-GCGCGCGGCGUu -3' miRNA: 3'- -UGGacCAGaAGCAcaUGUGCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 66801 | 0.66 | 0.943482 |
Target: 5'- gUCUGGgcgUCG-GUAgGCGgGGCGCu -3' miRNA: 3'- uGGACCagaAGCaCAUgUGCgUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 29413 | 0.66 | 0.933763 |
Target: 5'- aACCUGGUUUgacc-UGCGCGCcagcgAGCGCu -3' miRNA: 3'- -UGGACCAGAagcacAUGUGCG-----UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 55377 | 0.66 | 0.933763 |
Target: 5'- gACCUGGUUUcUG-GUGCcgcugaucGCGCuGGCGCu -3' miRNA: 3'- -UGGACCAGAaGCaCAUG--------UGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 16289 | 0.66 | 0.95222 |
Target: 5'- cGCCggcgGGUCgaCGUaUACcgucaccCGCGGCGCg -3' miRNA: 3'- -UGGa---CCAGaaGCAcAUGu------GCGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 97801 | 0.66 | 0.95222 |
Target: 5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3' miRNA: 3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 76504 | 0.66 | 0.947973 |
Target: 5'- gACCcGGcggaaaUCUUCGUGgcccagaugAUGCgGCAGCGCu -3' miRNA: 3'- -UGGaCC------AGAAGCACa--------UGUG-CGUCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 22602 | 0.66 | 0.943942 |
Target: 5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3' miRNA: 3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 101829 | 0.66 | 0.943482 |
Target: 5'- gGCC--GUCUUCgGUGUGCGcCGUuGCGCc -3' miRNA: 3'- -UGGacCAGAAG-CACAUGU-GCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 93664 | 0.66 | 0.943482 |
Target: 5'- aGCUg---CUUCGUGcGCAUGCcGCGCg -3' miRNA: 3'- -UGGaccaGAAGCACaUGUGCGuCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 54372 | 0.66 | 0.938746 |
Target: 5'- gGCCgGGUCguccCG-GUcCGCGCcGGCGCg -3' miRNA: 3'- -UGGaCCAGaa--GCaCAuGUGCG-UCGCG- -5' |
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6376 | 3' | -54 | NC_001847.1 | + | 41720 | 0.66 | 0.933763 |
Target: 5'- gGCCaGGg---CGUGUACAgCGCcguGCGCu -3' miRNA: 3'- -UGGaCCagaaGCACAUGU-GCGu--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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