miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 78665 0.77 0.415889
Target:  5'- cGCCUGcGUCgccggCGUGcGCACGCgGGCGCu -3'
miRNA:   3'- -UGGAC-CAGaa---GCACaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 86526 0.69 0.838591
Target:  5'- -gCUGGgCgccCGcGUGCugGCGGCGCg -3'
miRNA:   3'- ugGACCaGaa-GCaCAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 5859 0.69 0.838591
Target:  5'- cGCCUGGcCcUCGagGUgguccagcgcuGCGCGCAGgGCg -3'
miRNA:   3'- -UGGACCaGaAGCa-CA-----------UGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 54036 0.66 0.95222
Target:  5'- uUCUGGaugUCcUCGUcgGCGCGCGGCGa -3'
miRNA:   3'- uGGACC---AGaAGCAcaUGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 31062 0.73 0.602424
Target:  5'- cGCCgcugugGGUUUUCGcaaccaGUACgACGCGGCGCu -3'
miRNA:   3'- -UGGa-----CCAGAAGCa-----CAUG-UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 52285 0.72 0.665047
Target:  5'- cGCC-GG-CUUUGUGUGCGCGaccgcgGGCGCg -3'
miRNA:   3'- -UGGaCCaGAAGCACAUGUGCg-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 76799 0.71 0.740663
Target:  5'- cGCCUGGcCgcccucugcuggcagUUUGUGcacUAUACGCGGCGCc -3'
miRNA:   3'- -UGGACCaG---------------AAGCAC---AUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 33777 0.7 0.766151
Target:  5'- uGCCgcugcagGG-CUUCGcgggGcUGCGCGCGGCGCc -3'
miRNA:   3'- -UGGa------CCaGAAGCa---C-AUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 10951 0.7 0.794505
Target:  5'- -gCUGGcCUUUGcgcauaUGUACgugGCGCGGCGCg -3'
miRNA:   3'- ugGACCaGAAGC------ACAUG---UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 103882 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 36507 0.69 0.821486
Target:  5'- uUCUGGgcgacgaagCggCgGUGUGCACGCuGCGCg -3'
miRNA:   3'- uGGACCa--------GaaG-CACAUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 89210 0.7 0.794505
Target:  5'- uGCUUGuGUUUgcgcaGUG-GCACGCGGCGCu -3'
miRNA:   3'- -UGGAC-CAGAag---CACaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 122630 0.75 0.510461
Target:  5'- gACCUGGUCUUUGacgACGCGcCGGCuGCg -3'
miRNA:   3'- -UGGACCAGAAGCacaUGUGC-GUCG-CG- -5'
6376 3' -54 NC_001847.1 + 16616 0.69 0.821486
Target:  5'- uGCgUGGUCUUUGgggGgGgGCGCGGCGg -3'
miRNA:   3'- -UGgACCAGAAGCa--CaUgUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 26772 0.74 0.55078
Target:  5'- gGCCUGGUCa--GUGcGCGCGCccuccuGCGCg -3'
miRNA:   3'- -UGGACCAGaagCACaUGUGCGu-----CGCG- -5'
6376 3' -54 NC_001847.1 + 72115 0.7 0.775739
Target:  5'- cGCCgUGGUCc-CGgccuucGCGCGCGGCGCg -3'
miRNA:   3'- -UGG-ACCAGaaGCaca---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 37036 0.69 0.821486
Target:  5'- gACCUGG---UCGUGgcCGCGCucaugGGCGCc -3'
miRNA:   3'- -UGGACCagaAGCACauGUGCG-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 30187 0.69 0.838591
Target:  5'- gACCUGGcCgacgCG-GUGCGCGgCGcGCGCg -3'
miRNA:   3'- -UGGACCaGaa--GCaCAUGUGC-GU-CGCG- -5'
6376 3' -54 NC_001847.1 + 134746 0.73 0.602424
Target:  5'- cCCUcGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3'
miRNA:   3'- uGGA-CCAGA---AGCa------CA---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 99683 0.72 0.675438
Target:  5'- -gCUGG-CUUUGcg-GCGCGCGGCGCg -3'
miRNA:   3'- ugGACCaGAAGCacaUGUGCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.