miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 1069 0.69 0.830133
Target:  5'- cCCUGGUCcgCGUcccaGUcCACGCcgGGCGCc -3'
miRNA:   3'- uGGACCAGaaGCA----CAuGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 2049 0.67 0.911341
Target:  5'- gGCCacgauagGGUCUUUG-GUGCGCa-GGCGCa -3'
miRNA:   3'- -UGGa------CCAGAAGCaCAUGUGcgUCGCG- -5'
6376 3' -54 NC_001847.1 + 2237 0.68 0.887796
Target:  5'- gGCgCUGGgcgCgggCGUGUgguaguccccgggcgGCACGCGGCGg -3'
miRNA:   3'- -UG-GACCa--Gaa-GCACA---------------UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 3056 0.66 0.938746
Target:  5'- aGCCgcaggcgcaGGUUgugcUCGUaGUGCA-GCAGCGCg -3'
miRNA:   3'- -UGGa--------CCAGa---AGCA-CAUGUgCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 3973 0.67 0.92305
Target:  5'- cGCgaGGUgggcCGUGaGCACGCcAGCGCg -3'
miRNA:   3'- -UGgaCCAgaa-GCACaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 5859 0.69 0.838591
Target:  5'- cGCCUGGcCcUCGagGUgguccagcgcuGCGCGCAGgGCg -3'
miRNA:   3'- -UGGACCaGaAGCa-CA-----------UGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 7243 0.67 0.92305
Target:  5'- -gCUGGUCgggUgGcUGUGCggGCGCGGCGg -3'
miRNA:   3'- ugGACCAGa--AgC-ACAUG--UGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 10951 0.7 0.794505
Target:  5'- -gCUGGcCUUUGcgcauaUGUACgugGCGCGGCGCg -3'
miRNA:   3'- ugGACCaGAAGC------ACAUG---UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 12388 0.66 0.947973
Target:  5'- gGCCcGGac--CGUGUAUGCGCAGCa- -3'
miRNA:   3'- -UGGaCCagaaGCACAUGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 13739 0.67 0.91732
Target:  5'- uCCUGGg---CGUGgggcugauCGCGCAGCGg -3'
miRNA:   3'- uGGACCagaaGCACau------GUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 14624 0.68 0.884988
Target:  5'- cACgUGGUUUUCG---AC-CGCGGCGCu -3'
miRNA:   3'- -UGgACCAGAAGCacaUGuGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 16289 0.66 0.95222
Target:  5'- cGCCggcgGGUCgaCGUaUACcgucaccCGCGGCGCg -3'
miRNA:   3'- -UGGa---CCAGaaGCAcAUGu------GCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 16616 0.69 0.821486
Target:  5'- uGCgUGGUCUUUGgggGgGgGCGCGGCGg -3'
miRNA:   3'- -UGgACCAGAAGCa--CaUgUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 19616 0.67 0.92305
Target:  5'- cGCCaUGGUgaCUauagucaCGUGUGCggauagGCGCGGCGCc -3'
miRNA:   3'- -UGG-ACCA--GAa------GCACAUG------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 20759 0.68 0.862764
Target:  5'- gGCCUcGcCUUCGUcgGCGCGCAGaUGCg -3'
miRNA:   3'- -UGGAcCaGAAGCAcaUGUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 22602 0.66 0.943942
Target:  5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3'
miRNA:   3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 23860 0.67 0.92305
Target:  5'- -gCUGGcCUcgcgCGUaaaGUGCuuuCGCAGCGCg -3'
miRNA:   3'- ugGACCaGAa---GCA---CAUGu--GCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 26772 0.74 0.55078
Target:  5'- gGCCUGGUCa--GUGcGCGCGCccuccuGCGCg -3'
miRNA:   3'- -UGGACCAGaagCACaUGUGCGu-----CGCG- -5'
6376 3' -54 NC_001847.1 + 27422 0.67 0.91732
Target:  5'- cGCCggcgcGGUCggugUCGUucGCA-GCGGCGCg -3'
miRNA:   3'- -UGGa----CCAGa---AGCAcaUGUgCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 28691 0.67 0.911341
Target:  5'- gGCgCUGGUggacCUg-GUGUACGCGCGcCGCg -3'
miRNA:   3'- -UG-GACCA----GAagCACAUGUGCGUcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.